RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TRIM31Q9BZY9 425 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 PLAC1Q9HBJ0 212 aa13.57□□□□□ -0.24
SDC1-204ENST00000429035 TRMT1Q9NXH9 659 aaKnown RBP13.57□□□□□ -0.24
SDC1-204ENST00000429035 ERI3O43414 337 aaKnown RBP13.56□□□□□ -0.24
SDC1-204ENST00000429035 AGAP20933 346 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 HLCSP50747 726 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 CLCN2P51788 898 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 ARL4CP56559 192 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 STXBP1P61764 594 aaKnown RBP13.56□□□□□ -0.24
SDC1-204ENST00000429035 MORF4L2Q15014 288 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 TSNQ15631 228 aaKnown RBP13.56□□□□□ -0.24
SDC1-204ENST00000429035 C18orf21Q32NC0 220 aaPredicted RBP13.56□□□□□ -0.24
SDC1-204ENST00000429035 RNFT1Q5M7Z0 435 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 CLNKQ7Z7G1 428 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 EID3Q8N140 333 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 NKAPQ8N5F7 415 aaKnown RBP13.56□□□□□ -0.24
SDC1-204ENST00000429035 ADAMTS18Q8TE60 1221 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 CHTF18Q8WVB6 975 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 GAL3ST3Q96A11 431 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 CCDC77Q9BR77 488 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 COPS7BQ9H9Q2 264 aaPredicted RBP13.56□□□□□ -0.24
SDC1-204ENST00000429035 PRTFDC1Q9NRG1 225 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 WWOXQ9NZC7 414 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 CTNNAL1Q9UBT7 734 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 MMACHCQ9Y4U1 282 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 OARD1Q9Y530 152 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 PSAT1Q9Y617 370 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 APCP25054 2843 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 EML6Q6ZMW3 1958 aa13.56□□□□□ -0.24
SDC1-204ENST00000429035 TEP1Q99973 2627 aaKnown RBP13.56□□□□□ -0.24
SDC1-204ENST00000429035 ZNF407Q9C0G0 2248 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 IGKV3D-11A0A0A0MRZ8 115 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 A0A1B0GTH9 108 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 ZSCAN12O43309 604 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 HS6ST1O60243 411 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 H2AFYO75367 372 aaKnown RBP13.55□□□□□ -0.24
SDC1-204ENST00000429035 ITGA10O75578 1167 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 SERPINA6P08185 405 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 PPP2R1BP30154 601 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 GDF5P43026 501 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 SLC12A2P55011 1212 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 DR1Q01658 176 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 MGAT5Q09328 741 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 SLC13A2Q13183 592 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 STEAP4Q687X5 459 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 ADAMTSL2Q86TH1 951 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 DOLPP1Q86YN1 238 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 NFAM1Q8NET5 270 aaPredicted RBP13.55□□□□□ -0.24
SDC1-204ENST00000429035 B3GNT7Q8NFL0 401 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 CREB3L4Q8TEY5 395 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 CA5BP1Q8WTZ4 195 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 NCLNQ969V3 563 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 AICDAQ9GZX7 198 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 COQ3Q9NZJ6 369 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 ERVK-11Q9UQG0 969 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 TEX264Q9Y6I9 313 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 DNAJC13O75165 2243 aa13.55□□□□□ -0.24
SDC1-204ENST00000429035 INTS1Q8N201 2190 aaKnown RBP13.54□□□□□ -0.24
SDC1-204ENST00000429035 A0A088AWK7 358 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 MYOCOSA0A1B0GUC4 107 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 FAM90A27PA6NNH2 459 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 KLRC4-KLRK1H3BQV0 150 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 CES2O00748 559 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 CLGNO14967 610 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 B3GALT2O43825 422 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 PEX1O43933 1283 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 C1GALT1C1LP0DN25 315 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 TCP1P17987 556 aaKnown RBP13.54□□□□□ -0.24
SDC1-204ENST00000429035 POU3F2P20265 443 aaPredicted RBP13.54□□□□□ -0.24
SDC1-204ENST00000429035 ZNF10P21506 573 aaPredicted RBP13.54□□□□□ -0.24
SDC1-204ENST00000429035 HNRNPH1P31943 449 aaKnown RBP13.54□□□□□ -0.24
SDC1-204ENST00000429035 PTGS2P35354 604 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 PLA2G16P53816 162 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 RAB38P57729 211 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 TAS2R39P59534 338 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 PLGLB1Q02325 96 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 PDIA2Q13087 525 aaKnown RBP13.54□□□□□ -0.24
SDC1-204ENST00000429035 FASTKD3Q14CZ7 662 aaKnown RBP13.54□□□□□ -0.24
SDC1-204ENST00000429035 FBXO48Q5FWF7 155 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 ZC3HC1Q86WB0 502 aaKnown RBP13.54□□□□□ -0.24
SDC1-204ENST00000429035 ZNF227Q86WZ6 799 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 SULF2Q8IWU5 870 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 KLHDC8AQ8IYD2 350 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 KRT78Q8N1N4 520 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 SNX31Q8N9S9 440 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 POGLUT1Q8NBL1 392 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 APCDD1LQ8NCL9 501 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 FBXO36Q8NEA4 188 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 SLCO2A1Q92959 643 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 EXT2Q93063 718 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 VMP1Q96GC9 406 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 VPS39Q96JC1 886 aa13.54□□□□□ -0.24
SDC1-204ENST00000429035 LIN28AQ9H9Z2 209 aaKnown RBP13.54□□□□□ -0.24
SDC1-204ENST00000429035 CLK4Q9HAZ1 481 aaKnown RBP13.54□□□□□ -0.24
SDC1-204ENST00000429035 MRPS33Q9Y291 106 aaKnown RBP13.54□□□□□ -0.24
SDC1-204ENST00000429035 FBN2P35556 2912 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 F8P00451 2351 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 CSMD2Q7Z408 3487 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 A8MVJ9 347 aa13.53□□□□□ -0.24
SDC1-204ENST00000429035 E9PLN8 166 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms