RNA–Protein interactions for RNA: ENST00000426246.2

USP42-203, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 3,611 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-203ENST00000426246 KCNK12Q9HB15 430 aa12.85□□□□□ -0.35
USP42-203ENST00000426246 AP2A2O94973 939 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 CTNNB1P35222 781 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 MANFP55145 182 aaKnown RBP12.84□□□□□ -0.35
USP42-203ENST00000426246 MAD2L1BPQ15013 274 aaPredicted RBP12.84□□□□□ -0.35
USP42-203ENST00000426246 UBE2UQ5VVX9 321 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 CCDC149Q6ZUS6 474 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 AADATQ8N5Z0 425 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 CELF2-AS1Q8N7Q2 184 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 VOPP1Q96AW1 172 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 DUS3LQ96G46 650 aaKnown RBP12.84□□□□□ -0.35
USP42-203ENST00000426246 TTTY10Q9BZA0 68 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 GORASP2Q9H8Y8 452 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 PRKAG2Q9UGJ0 569 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 KLHL20Q9Y2M5 609 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 GMEB1Q9Y692 573 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 A0A1B0GVC2 190 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 A6NIN4 97 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 GADD45GO95257 159 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 CAPNS1P04632 268 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 AMD1P17707 334 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 HOXC5Q00444 222 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 SCARB2Q14108 478 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.84□□□□□ -0.35
USP42-203ENST00000426246 TMEM53Q6P2H8 277 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 C22orf39Q6P5X5 142 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 DCAF4L2Q8NA75 395 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 RNF31Q96EP0 1072 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 ABCG4Q9H172 646 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 GPR52Q9Y2T5 361 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 DYRK1BQ9Y463 629 aa12.84□□□□□ -0.35
USP42-203ENST00000426246 GAPDHSO14556 408 aaPredicted RBP12.83□□□□□ -0.35
USP42-203ENST00000426246 SERPINB7O75635 380 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 SERPINI2O75830 405 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 PRPS2P11908 318 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 IMPDH2P12268 514 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 BUD31P41223 144 aaPredicted RBP12.83□□□□□ -0.35
USP42-203ENST00000426246 TOP3AQ13472 1001 aaPredicted RBP12.83□□□□□ -0.35
USP42-203ENST00000426246 ZNF404Q494X3 552 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 NIPAL1Q6NVV3 410 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 ZNF783Q6ZMS7 281 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 RBM45Q8IUH3 476 aaKnown RBP12.83□□□□□ -0.35
USP42-203ENST00000426246 AMER2Q8N7J2 671 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 ZNF675Q8TD23 568 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 MUL1Q969V5 352 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 ISG20Q96AZ6 181 aaKnown RBP12.83□□□□□ -0.35
USP42-203ENST00000426246 FAM129BQ96TA1 746 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 WDR12Q9GZL7 423 aaKnown RBP12.83□□□□□ -0.35
USP42-203ENST00000426246 IL1RAPQ9NPH3 570 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 SERHLQ9NQF3 203 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 HCFC2Q9Y5Z7 792 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 PMF1-BGLAPU3KQ54 211 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 TRIOO75962 3097 aa12.83□□□□□ -0.35
USP42-203ENST00000426246 DYTNA2CJ06 578 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 TAF4O00268 1085 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 GRM6O15303 877 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 PRKRAO75569 313 aaKnown RBP12.83□□□□□ -0.36
USP42-203ENST00000426246 MED26O95402 600 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 OXSR1O95747 527 aaPredicted RBP12.83□□□□□ -0.36
USP42-203ENST00000426246 CD22P20273 847 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 ELMOD1Q8N336 334 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 ZNF614Q8N883 585 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 PEX13Q92968 403 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 LMLNQ96KR4 655 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 GFM1Q96RP9 751 aaKnown RBP12.83□□□□□ -0.36
USP42-203ENST00000426246 TMEM9Q9P0T7 183 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 TMCC3Q9ULS5 477 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 LYVE1Q9Y5Y7 322 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 TRBC2A0A5B9 178 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 HYAL3O43820 417 aaPredicted RBP12.83□□□□□ -0.36
USP42-203ENST00000426246 PCDH8O95206 1070 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 GPR1P46091 355 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 INPP1P49441 399 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 ILF2Q12905 390 aaKnown RBP12.83□□□□□ -0.36
USP42-203ENST00000426246 ATG9BQ674R7 924 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 DESI1Q6ICB0 168 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 RRM2BQ7LG56 351 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 NPAS3Q8IXF0 933 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 ENTHD1Q8IYW4 607 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 OR7G3Q8NG95 312 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 C1GALT1C1Q96EU7 318 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 EMILIN2Q9BXX0 1053 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 XKR8Q9H6D3 395 aa12.83□□□□□ -0.36
USP42-203ENST00000426246 GPC6Q9Y625 555 aaPredicted RBP12.83□□□□□ -0.36
USP42-203ENST00000426246 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.82□□□□□ -0.36
USP42-203ENST00000426246 MMP20O60882 483 aa12.82□□□□□ -0.36
USP42-203ENST00000426246 SPNP16150 400 aa12.82□□□□□ -0.36
USP42-203ENST00000426246 POLR2EP19388 210 aaKnown RBP12.82□□□□□ -0.36
USP42-203ENST00000426246 CD97P48960 835 aa12.82□□□□□ -0.36
USP42-203ENST00000426246 GRIK2Q13002 908 aa12.82□□□□□ -0.36
USP42-203ENST00000426246 SF3B4Q15427 424 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP42-203ENST00000426246 LIPKQ5VXJ0 399 aa12.82□□□□□ -0.36
USP42-203ENST00000426246 GTF2IRD2BQ6EKJ0 949 aa12.82□□□□□ -0.36
USP42-203ENST00000426246 AKAP14Q86UN6 197 aa12.82□□□□□ -0.36
USP42-203ENST00000426246 GTF2IRD2Q86UP8 949 aa12.82□□□□□ -0.36
USP42-203ENST00000426246 TCEANCQ8N8B7 351 aa12.82□□□□□ -0.36
USP42-203ENST00000426246 TBX5Q99593 518 aa12.82□□□□□ -0.36
USP42-203ENST00000426246 ITPAQ9BY32 194 aa12.82□□□□□ -0.36
USP42-203ENST00000426246 QRSL1Q9H0R6 528 aaKnown RBP12.82□□□□□ -0.36
USP42-203ENST00000426246 TM9SF3Q9HD45 589 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms