RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 BMP10O95393 424 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 ETHE1O95571 254 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 MLYCDO95822 493 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 MYZAPP0CAP1 466 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 ALDH3A1P30838 453 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 HPDP32754 393 aaPredicted RBP11.79□□□□□ -0.52
SKA1-203ENST00000417656 PIK3CBP42338 1070 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 EFNA3P52797 238 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 NAGLUP54802 743 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 DNAJB13P59910 316 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 RHDQ02161 417 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 TGM3Q08188 693 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 CHAF1BQ13112 559 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 SSPNQ14714 243 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 MINDY4Q4G0A6 757 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 SGO1Q5FBB7 561 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 TCHHL1Q5QJ38 904 aaPredicted RBP11.79□□□□□ -0.52
SKA1-203ENST00000417656 MFSD4BQ5TF39 518 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 KHDRBS2Q5VWX1 349 aaKnown RBP11.79□□□□□ -0.52
SKA1-203ENST00000417656 LIPMQ5VYY2 423 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 FRG2Q64ET8 278 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 TTC19Q6DKK2 380 aaPredicted RBP11.79□□□□□ -0.52
SKA1-203ENST00000417656 NIPAL1Q6NVV3 410 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 ABHD17CQ6PCB6 329 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 BORAQ6PGQ7 559 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 ZNF793Q6ZN11 406 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 UBE3DQ7Z6J8 389 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 LAPTM4BQ86VI4 370 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 CA13Q8N1Q1 262 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 CDYL2Q8N8U2 506 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 AGAP11Q8TF27 550 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 MTFMTQ96DP5 389 aaKnown RBP11.79□□□□□ -0.52
SKA1-203ENST00000417656 CMTM7Q96FZ5 175 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 MAGEB10Q96LZ2 347 aaPredicted RBP11.79□□□□□ -0.52
SKA1-203ENST00000417656 FRG2BQ96QU4 278 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 MESP1Q9BRJ9 268 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 SORBS1Q9BX66 1292 aaKnown RBP11.79□□□□□ -0.52
SKA1-203ENST00000417656 TGIF2Q9GZN2 237 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 ELOVL6Q9H5J4 265 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 ADGRE2Q9UHX3 823 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 C3orf18Q9UK00 162 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 STK38LQ9Y2H1 464 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 HS3ST3B1Q9Y662 390 aa11.79□□□□□ -0.52
SKA1-203ENST00000417656 A0A088AWK7 358 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 GOLGA6L10A6NI86 522 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 IDSB3KWA1 339 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 UBFD1O14562 309 aaKnown RBP11.78□□□□□ -0.52
SKA1-203ENST00000417656 CDC123O75794 336 aaPredicted RBP11.78□□□□□ -0.52
SKA1-203ENST00000417656 ITGB2P05107 769 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 HEXBP07686 556 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 ZNF10P21506 573 aaPredicted RBP11.78□□□□□ -0.52
SKA1-203ENST00000417656 MMP11P24347 488 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 SSR2P43308 183 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 HTR6P50406 440 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 RAP1GDS1P52306 607 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 MTTPP55157 894 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 PKNOX1P55347 436 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 IFT88Q13099 833 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 LINC00303Q3SY05 128 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 TMEM35AQ53FP2 167 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 CFAP157Q5JU67 520 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 FAAH2Q6GMR7 532 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 THAP4Q8WY91 577 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 PKNOX2Q96KN3 472 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 KCNC2Q96PR1 638 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 KCNA7Q96RP8 456 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 HBEGFQ99075 208 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 GATA5Q9BWX5 397 aaPredicted RBP11.78□□□□□ -0.52
SKA1-203ENST00000417656 SLC29A3Q9BZD2 475 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 VN1R1Q9GZP7 353 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 TMBIM4Q9HC24 238 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 SSU72Q9NP77 194 aaKnown RBP11.78□□□□□ -0.52
SKA1-203ENST00000417656 MID1IP1Q9NPA3 183 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 LANCL2Q9NS86 450 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 SEMA3GQ9NS98 782 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 FARSBQ9NSD9 589 aaKnown RBP11.78□□□□□ -0.52
SKA1-203ENST00000417656 P4HTMQ9NXG6 502 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 MKL2Q9ULH7 1088 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 ACTL7BQ9Y614 415 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 KCNMB2Q9Y691 235 aa11.78□□□□□ -0.52
SKA1-203ENST00000417656 OR2W5A6NFC9 320 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 ERVH48-1M5A8F1 160 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 MASP2O00187 686 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 MANBAO00462 879 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 PLPP1O14494 284 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 SOCS6O14544 535 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 B3GALT2O43825 422 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 TRIM13O60858 407 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 ALOX12BO75342 701 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 DNAJB5O75953 348 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 ESRRBO95718 433 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 PDYNP01213 254 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 IGHEP01854 428 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 ENO1P06733 434 aaKnown RBP11.77□□□□□ -0.53
SKA1-203ENST00000417656 FHP07954 510 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 RNH1P13489 461 aaKnown RBP11.77□□□□□ -0.53
SKA1-203ENST00000417656 HMOX2P30519 316 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 ETV4P43268 484 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 EMP2P54851 167 aa11.77□□□□□ -0.53
SKA1-203ENST00000417656 EEF1A2Q05639 463 aaKnown RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms