RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 TMEM145Q8NBT3 493 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 KLHL6Q8WZ60 621 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 FAM210AQ96ND0 272 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 UHRF1Q96T88 793 aaPredicted RBP17.82■□□□□ 0.44
USP48-204ENST00000400301 CPPED1Q9BRF8 314 aaPredicted RBP17.82■□□□□ 0.44
USP48-204ENST00000400301 CPEB1Q9BZB8 566 aaKnown RBP17.82■□□□□ 0.44
USP48-204ENST00000400301 MS4A12Q9NXJ0 267 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 STMN3Q9NZ72 180 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 DNAJC27Q9NZQ0 273 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 UTS2RQ9UKP6 389 aa17.82■□□□□ 0.44
USP48-204ENST00000400301 RBMX2Q9Y388 322 aaKnown RBP17.82■□□□□ 0.44
USP48-204ENST00000400301 MZT2AQ6P582 158 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 TBPL2Q6SJ96 375 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 GAREM2Q75VX8 874 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 TRIM46Q7Z4K8 759 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 SERPINA11Q86U17 422 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 ZNF689Q96CS4 500 aaPredicted RBP17.81■□□□□ 0.44
USP48-204ENST00000400301 DEPDC7Q96QD5 511 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 TBCCD1Q9NVR7 557 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 PAK1IP1Q9NWT1 392 aaPredicted RBP17.81■□□□□ 0.44
USP48-204ENST00000400301 COLEC10Q9Y6Z7 277 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 GLOD5A6NK44 160 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 SLC30A4O14863 429 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 CCNKO75909 580 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 CTSEP14091 401 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 BMXP51813 675 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 RGNQ15493 299 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 PIWIL3Q7Z3Z3 882 aaKnown RBP17.81■□□□□ 0.44
USP48-204ENST00000400301 SLC22A16Q86VW1 577 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 SLC5A8Q8N695 610 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 TESCQ96BS2 214 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 SPATA9Q9BWV2 254 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 TRIM39Q9HCM9 518 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 MAFFQ9ULX9 164 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 HSPE1-MOB4S4R3N1 261 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 IRGMA1A4Y4 181 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 UGDHO60701 494 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 ABLIM3O94929 683 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 PIGXQ8TBF5 258 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 BCL7CQ8WUZ0 217 aaPredicted RBP17.81■□□□□ 0.44
USP48-204ENST00000400301 NEIL2Q969S2 332 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 DUS3LQ96G46 650 aaKnown RBP17.81■□□□□ 0.44
USP48-204ENST00000400301 F2RL3Q96RI0 385 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 C1QTNF3Q9BXJ4 246 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 BHLHE41Q9C0J9 482 aaPredicted RBP17.81■□□□□ 0.44
USP48-204ENST00000400301 MAT2BQ9NZL9 334 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 ABCG2Q9UNQ0 655 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 ACOX3O15254 700 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 CAPN5O15484 640 aaPredicted RBP17.81■□□□□ 0.44
USP48-204ENST00000400301 STSP08842 583 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 C1SP09871 688 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 CSNK2A2P19784 350 aaPredicted RBP17.81■□□□□ 0.44
USP48-204ENST00000400301 CCR4P51679 360 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 NFE2L1Q14494 772 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 LARS2Q15031 903 aaKnown RBP17.81■□□□□ 0.44
USP48-204ENST00000400301 CPZQ66K79 652 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 NXPE4Q6UWF7 544 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 ZNF683Q8IZ20 524 aa17.81■□□□□ 0.44
USP48-204ENST00000400301 LAMP2P13473 410 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 TCEAL4Q96EI5 215 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 C17orf62Q9BQA9 187 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 SLC2A11Q9BYW1 496 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 PRDM8Q9NQV8 689 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 ZNF624Q9P2J8 865 aaPredicted RBP17.8■□□□□ 0.44
USP48-204ENST00000400301 MRPS7Q9Y2R9 242 aaKnown RBP17.8■□□□□ 0.44
USP48-204ENST00000400301 RWDD3Q9Y3V2 267 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 TSPAN12O95859 305 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 PRG2P13727 222 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 PFKLP17858 780 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 UQCRC2P22695 453 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 AVPR1BP47901 424 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 RAB8AP61006 207 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 STXBP1P61764 594 aaKnown RBP17.8■□□□□ 0.44
USP48-204ENST00000400301 LASP1Q14847 261 aaKnown RBP17.8■□□□□ 0.44
USP48-204ENST00000400301 GRIN2CQ14957 1233 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 ZNHIT3Q15649 155 aaPredicted RBP17.8■□□□□ 0.44
USP48-204ENST00000400301 ALG1LQ6GMV1 187 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 MZT2BQ6NZ67 158 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 ZSWIM9Q86XI8 627 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 ZNF675Q8TD23 568 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 PIP5K1AQ99755 562 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 EHD1Q9H4M9 534 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 SPIN1Q9Y657 262 aaPredicted RBP17.8■□□□□ 0.44
USP48-204ENST00000400301 RBBP6Q7Z6E9 1792 aaKnown RBP17.8■□□□□ 0.44
USP48-204ENST00000400301 C6P13671 934 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 CDKN2CP42773 168 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 FBXW4P57775 412 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 CLEC12AQ5QGZ9 265 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 ERN2Q76MJ5 926 aaKnown RBP17.8■□□□□ 0.44
USP48-204ENST00000400301 TTLQ8NG68 377 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 KAT2AQ92830 837 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 CCDC115Q96NT0 180 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 GMEB1Q9Y692 573 aa17.8■□□□□ 0.44
USP48-204ENST00000400301 GABRR3A8MPY1 467 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 TLX2O43763 284 aaPredicted RBP17.79■□□□□ 0.44
USP48-204ENST00000400301 SLC35G6P0C7Q6 338 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 TIE1P35590 1138 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 VEZF1Q14119 521 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 QPRTQ15274 297 aa17.79■□□□□ 0.44
USP48-204ENST00000400301 CRTC2Q53ET0 693 aaPredicted RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms