RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 PCDHGA2Q9Y5H1 932 aa13.63□□□□□ -0.23
SHROOM1-203ENST00000378679 OR5K4A6NMS3 321 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 NADKO95544 446 aaPredicted RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 NR2F6P10588 404 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 HTR1EP28566 365 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 ZNF630Q2M218 657 aaPredicted RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 VMACQ2NL98 169 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 TIMM50Q3ZCQ8 353 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 METTL2BQ6P1Q9 378 aaKnown RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 HACD2Q6Y1H2 254 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 NEK10Q6ZWH5 1172 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 AHSA2Q719I0 299 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 SLC22A15Q8IZD6 547 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 LILRA3Q8N6C8 439 aaPredicted RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 KAT2AQ92830 837 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 TMIGD2Q96BF3 282 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 MRPL48Q96GC5 212 aaKnown RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 EGLN2Q96KS0 407 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 TRIP11Q15643 1979 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 AK4P27144 223 aaPredicted RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 MLLT3P42568 568 aaPredicted RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 DEFA1P59665 94 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 DEFA3P59666 94 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 HYAL2Q12891 473 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 SLAMF1Q13291 335 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 MYBPC3Q14896 1274 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 ELOCQ15369 112 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 FAM180BQ6P0A1 224 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 ZNF761Q86XN6 746 aaPredicted RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 ZNF563Q8TA94 476 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 ACPTQ9BZG2 426 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 C2orf74A8MZ97 194 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 H6PDO95479 791 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 FOSL2P15408 326 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 KDELR2P33947 212 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 CLK3P49761 638 aaKnown RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 VSX2P58304 361 aaPredicted RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 IRF4Q15306 451 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 TCTN1Q2MV58 587 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 COQ5Q5HYK3 327 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 OR10G2Q8NGC3 310 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 OR2L2Q8NH16 312 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 OR8K5Q8NH50 307 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 BORCS5Q969J3 196 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 COX4I2Q96KJ9 171 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 LDHAL6BQ9BYZ2 381 aaPredicted RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 THUMPD1Q9NXG2 353 aaKnown RBP13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 GMEB2Q9UKD1 530 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 PCDHGA7Q9Y5G6 932 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 GPR45Q9Y5Y3 372 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 SHROOM3Q8TF72 1996 aa13.62□□□□□ -0.23
SHROOM1-203ENST00000378679 A8MUA0 341 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 ASNA1O43681 348 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 GMFGO60234 142 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 SLC25A12O75746 678 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 ALDOCP09972 364 aaKnown RBP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 MTHFD2P13995 350 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 SPATS1Q496A3 300 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 CYBRD1Q53TN4 286 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 SH2D5Q6ZV89 423 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 MAVSQ7Z434 540 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 PDZD3Q86UT5 571 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 SLC34A3Q8N130 599 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 LGI4Q8N135 537 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 RNF175Q8N4F7 328 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 DPH2Q9BQC3 489 aaPredicted RBP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 HMG20AQ9NP66 347 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 CCM2LQ9NUG4 571 aaPredicted RBP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 MRTO4Q9UKD2 239 aaKnown RBP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 CEP350Q5VT06 3117 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 SEC16AO15027 2179 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 TFECO14948 347 aaPredicted RBP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 ALPPP05187 535 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 DNAJA1P31689 397 aaKnown RBP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 TPTEP56180 551 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 LSAMPQ13449 338 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 WDR45BQ5MNZ6 344 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 CDC73Q6P1J9 531 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 ASPGQ86U10 573 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 TMC8Q8IU68 726 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 VRK3Q8IV63 474 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 GEMIN6Q8WXD5 167 aaKnown RBP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 POLR2J3Q9H1A7 115 aaKnown RBP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 CD320Q9NPF0 282 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 THAP10Q9P2Z0 257 aaPredicted RBP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 ACSL6Q9UKU0 697 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 BTN3A3O00478 584 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 UBFD1O14562 309 aaKnown RBP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 ARHGEF9O43307 516 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 ANXA8P13928 327 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 SDC1P18827 310 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 TRAF3Q13114 568 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 TARDBPQ13148 414 aaKnown RBP eCLIP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 WSCD2Q2TBF2 565 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 C5orf22Q49AR2 442 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 Q6ZSR6 202 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 CHMP1BQ7LBR1 199 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 PACRGLQ8N7B6 248 aa13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 Q8N9G6 341 aaPredicted RBP13.61□□□□□ -0.23
SHROOM1-203ENST00000378679 GATA6Q92908 595 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms