RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 RFTN2Q52LD8 501 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 ATG9BQ674R7 924 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 SLCO4C1Q6ZQN7 724 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 TMEM26Q6ZUK4 368 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 C17orf64Q86WR6 236 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 OR52E4Q8NGH9 312 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 GPBAR1Q8TDU6 330 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 ZNF583Q96ND8 569 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 DPY30Q9C005 99 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 ACTL8Q9H568 366 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 TM9SF3Q9HD45 589 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 ZNF624Q9P2J8 865 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 BLOC1S6Q9UL45 172 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 TRBV23OR9-2A0A075B6M9 112 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 CCDC163A0A0D9SF12 145 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 H0YIV9 168 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 UPK1AO00322 258 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 GNGT2O14610 69 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 C1GALT1C1LP0DN25 315 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 CCNA2P20248 432 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 HOXA6P31267 233 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 C10orf62Q5T681 223 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 MED27Q6P2C8 311 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 NXPE4Q6UWF7 544 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 TAF8Q7Z7C8 310 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 TRIM48Q8IWZ4 208 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 TMEM105Q8N8V8 129 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 LINC01555Q8NAE3 123 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 OR52E1Q8NGJ3 308 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 OR13F1Q8NGS4 319 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 OR2L8Q8NGY9 312 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 PATE1Q8WXA2 126 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 FIG4Q92562 907 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 HDAC2Q92769 488 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 HSPBAP1Q96EW2 488 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 XKR8Q9H6D3 395 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 SOX17Q9H6I2 414 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 KIR3DX1Q9H7L2 352 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 LRTM1Q9HBL6 345 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 DNAAF2Q9NVR5 837 aaKnown RBP12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 RHBDL2Q9NX52 303 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 ADGRE2Q9UHX3 823 aa12.6□□□□□ -0.39
SQSTM1-201ENST00000360718 ABCB7O75027 752 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 SEC22BO75396 215 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 CST1P01037 141 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 JUNDP17535 347 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 NEK2P51955 445 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 CYP4F3Q08477 520 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 C1orf61Q13536 156 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 SELPLGQ14242 412 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 KIAA0040Q15053 153 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 MOGQ16653 247 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 WDR45BQ5MNZ6 344 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 Q6ZNX1 250 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 JPH3Q8WXH2 748 aaPredicted RBP12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 UBE2E3Q969T4 207 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 WDR34Q96EX3 536 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 ACAT2Q9BWD1 397 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 PAIP1Q9H074 479 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 FAIMQ9NVQ4 179 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 APOBEC3BQ9UH17 382 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 TAC3Q9UHF0 121 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 PI4KAP42356 2102 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 A0A1W2PPW3 197 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 ELOVL7A1L3X0 281 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 SERTM1A2A2V5 107 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 OR5K4A6NMS3 321 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 TLR4O00206 839 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 PCNAP12004 261 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 PCSK2P16519 638 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 PKLRP30613 574 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 SHMT2P34897 504 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 YAP1P46937 504 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 RPL38P63173 70 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 HMGCS1Q01581 520 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 CSTF3Q12996 717 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 DDX39BQ13838 428 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 E2F2Q14209 437 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 CATSPEREQ5SY80 951 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 ZNF554Q86TJ5 538 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 KRT78Q8N1N4 520 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 RAB2BQ8WUD1 216 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 FAM162AQ96A26 154 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 SLC47A1Q96FL8 570 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 RBM4BQ9BQ04 359 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 RBM4Q9BWF3 364 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 DUSP15Q9H1R2 295 aaPredicted RBP12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 ADNPQ9H2P0 1102 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 C1orf109Q9NX04 203 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 ASIC5Q9NY37 505 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 USE1Q9NZ43 259 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 TAAR2Q9P1P5 351 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 CCL27Q9Y4X3 112 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 CROCCQ5TZA2 2017 aa12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 MDC1Q14676 2089 aaKnown RBP12.59□□□□□ -0.39
SQSTM1-201ENST00000360718 A0A1W2PPV9 198 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 TMEM221A6NGB7 291 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 M0R296 226 aa12.58□□□□□ -0.4
SQSTM1-201ENST00000360718 LAMTOR5O43504 91 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms