RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PHEXP78562 749 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 DGCR6Q14129 220 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 IFI44LQ53G44 452 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 Q6ZNX1 250 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 Q6ZPB1 254 aaPredicted RBP20.85■□□□□ 0.93
SHMT1-202ENST00000352886 VN1R5Q7Z5H4 357 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 MMAAQ8IVH4 418 aaKnown RBP20.85■□□□□ 0.93
SHMT1-202ENST00000352886 ENTHD1Q8IYW4 607 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 OXR1Q8N573 874 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 PLA2G15Q8NCC3 412 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 ABHD11Q8NFV4 315 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 GIPC3Q8TF64 312 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 BADQ92934 168 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 HRASLS5Q96KN8 279 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 KCNC2Q96PR1 638 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 FEVQ99581 238 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 CORINQ9Y5Q5 1042 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 KIF26AQ9ULI4 1882 aaPredicted RBP20.85■□□□□ 0.93
SHMT1-202ENST00000352886 HEPACAM2A8MVW5 462 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 VEGFDO43915 354 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 ACVR2AP27037 513 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 SOAT1P35610 550 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 RBBP4Q09028 425 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 FADDQ13158 208 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 PPIGQ13427 754 aaKnown RBP eCLIP20.85■□□□□ 0.932e-6■□□□□ 10.7
SHMT1-202ENST00000352886 GAB4Q2WGN9 574 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 TRIM40Q6P9F5 258 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 UNC5DQ6UXZ4 953 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 MMP21Q8N119 569 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 C12orf76Q8N812 135 aaPredicted RBP20.85■□□□□ 0.93
SHMT1-202ENST00000352886 OR52J3Q8NH60 311 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 SETD7Q8WTS6 366 aaKnown RBP20.85■□□□□ 0.93
SHMT1-202ENST00000352886 APH1BQ8WW43 257 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 UBE2E3Q969T4 207 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 CCNB1IP1Q9NPC3 277 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 ZDHHC4Q9NPG8 344 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 TDRKHQ9Y2W6 561 aaKnown RBP20.85■□□□□ 0.93
SHMT1-202ENST00000352886 PCDHGA6Q9Y5G7 932 aa20.85■□□□□ 0.93
SHMT1-202ENST00000352886 A0A1W2PRB8 838 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 LINC01553A4QN01 128 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 E9PQ18 207 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 PSMB9P28065 219 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 UBE3AQ05086 875 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 CLCA4Q14CN2 919 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 CYP27C1Q4G0S4 372 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 ERN2Q76MJ5 926 aaKnown RBP20.84■□□□□ 0.93
SHMT1-202ENST00000352886 SMG7Q92540 1137 aaKnown RBP20.84■□□□□ 0.93
SHMT1-202ENST00000352886 RAD51AP1Q96B01 352 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 TMEM38AQ9H6F2 299 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 MIEF1Q9NQG6 463 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 DENND4AQ7Z401 1863 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 NFATC1O95644 943 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 PTX3P26022 381 aaPredicted RBP20.84■□□□□ 0.93
SHMT1-202ENST00000352886 CDK6Q00534 326 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 SPIBQ01892 262 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 TMEM240Q5SV17 173 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 SYT6Q5T7P8 510 aaPredicted RBP20.84■□□□□ 0.93
SHMT1-202ENST00000352886 FAM180BQ6P0A1 224 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 AHSA2Q719I0 299 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 SVOPQ8N4V2 548 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 SMYD1Q8NB12 490 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 CXorf40AQ8TE69 158 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 TRUB1Q8WWH5 349 aaKnown RBP20.84■□□□□ 0.93
SHMT1-202ENST00000352886 MTERF3Q96E29 417 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 ZNF347Q96SE7 839 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 NRTNQ99748 197 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 SLC6A16Q9GZN6 736 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 ACOT13Q9NPJ3 140 aa20.84■□□□□ 0.93
SHMT1-202ENST00000352886 CDH12P55289 794 aa20.83■□□□□ 0.93
SHMT1-202ENST00000352886 TMEM52BQ4KMG9 183 aa20.83■□□□□ 0.93
SHMT1-202ENST00000352886 PDZD3Q86UT5 571 aa20.83■□□□□ 0.93
SHMT1-202ENST00000352886 PARP8Q8N3A8 854 aa20.83■□□□□ 0.93
SHMT1-202ENST00000352886 OR10G2Q8NGC3 310 aa20.83■□□□□ 0.93
SHMT1-202ENST00000352886 ZNF300Q96RE9 604 aaPredicted RBP20.83■□□□□ 0.93
SHMT1-202ENST00000352886 TMEM245Q9H330 911 aa20.83■□□□□ 0.93
SHMT1-202ENST00000352886 NUMA1Q14980 2115 aa20.83■□□□□ 0.93
SHMT1-202ENST00000352886 CCDC88CQ9P219 2028 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 PRAMEF25A6NGN4 478 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 VIPP01282 170 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 RB1P06400 928 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 LSM3P62310 102 aaKnown RBP20.83■□□□□ 0.92
SHMT1-202ENST00000352886 EEF1A2Q05639 463 aaKnown RBP20.83■□□□□ 0.92
SHMT1-202ENST00000352886 FPGSQ05932 587 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 FAM78AQ5JUQ0 283 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 LCTLQ6UWM7 567 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 PRSS48Q7RTY5 328 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 FAM129CQ86XR2 697 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 SLC5A8Q8N695 610 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 YIPF6Q96EC8 236 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 RLIMQ9NVW2 624 aa20.83■□□□□ 0.92
SHMT1-202ENST00000352886 ANTXRLA6NF34 631 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 KELP23276 732 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 TPP2P29144 1249 aaPredicted RBP20.82■□□□□ 0.92
SHMT1-202ENST00000352886 ST13P50502 369 aaKnown RBP20.82■□□□□ 0.92
SHMT1-202ENST00000352886 EIF4HQ15056 248 aaKnown RBP20.82■□□□□ 0.92
SHMT1-202ENST00000352886 ADPRMQ3LIE5 342 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 DUS1LQ6P1R4 473 aaKnown RBP20.82■□□□□ 0.92
SHMT1-202ENST00000352886 TMC5Q6UXY8 1006 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 SLC9B2Q86UD5 537 aa20.82■□□□□ 0.92
SHMT1-202ENST00000352886 P2RY8Q86VZ1 359 aa20.82■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms