RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 PTCHD3Q3KNS1 767 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 ACDQ96AP0 544 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 SLC25A44Q96H78 314 aaPredicted RBP12.2□□□□□ -0.46
SDC3-201ENST00000336798 OR10A4Q9H209 315 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 PTGES2Q9H7Z7 377 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 OXSMQ9NWU1 459 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 RPL26L1Q9UNX3 145 aaKnown RBP12.2□□□□□ -0.46
SDC3-201ENST00000336798 KCNC4Q03721 635 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 PMS2P3Q13401 168 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 GPR33Q49SQ1 333 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 FLYWCH1Q4VC44 716 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 MTFR2Q6P444 385 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 CNKSR3Q6P9H4 555 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 CRTC1Q6UUV9 634 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 IQCKQ8N0W5 287 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 ZFAND2BQ8WV99 257 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 KLHDC7BQ96G42 594 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 FN3KQ9H479 309 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 ITM2CQ9NQX7 267 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 POFUT2Q9Y2G5 429 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 LMTK2Q8IWU2 1503 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 CA12O43570 354 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 HCRTR2O43614 444 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 RAB36O95755 333 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 AOC1P19801 751 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 AGTR2P50052 363 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 GALK2Q01415 458 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 ADAM15Q13444 863 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 TREML1Q86YW5 311 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 ZSCAN1Q8NBB4 408 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 CGREF1Q99674 301 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 GPR88Q9GZN0 384 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 DCSTAMPQ9H295 470 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 DPAGT1Q9H3H5 408 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 REV1Q9UBZ9 1251 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 C19orf25Q9UFG5 118 aaPredicted RBP12.2□□□□□ -0.46
SDC3-201ENST00000336798 C12orf71A8MTZ7 269 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 ZNF35P13682 527 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 FOXN2P32314 431 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 ST3GAL3Q11203 375 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 MEP1AQ16819 746 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 BRAT1Q6PJG6 821 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 STOML3Q8TAV4 291 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 SMPDL3AQ92484 453 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 C1orf21Q9H246 121 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 NUFIP1Q9UHK0 495 aaKnown RBP12.2□□□□□ -0.46
SDC3-201ENST00000336798 CFL2Q9Y281 166 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 MST1RQ04912 1400 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 A0A0D9SEW6 157 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 XRCC1P18887 633 aaPredicted RBP12.2□□□□□ -0.46
SDC3-201ENST00000336798 GABRA3P34903 492 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 PSMA6P60900 246 aaKnown RBP12.2□□□□□ -0.46
SDC3-201ENST00000336798 DPYSL2Q16555 572 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 DUS1LQ6P1R4 473 aaKnown RBP12.2□□□□□ -0.46
SDC3-201ENST00000336798 TMIGD1Q6UXZ0 262 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 ERI1Q8IV48 349 aaKnown RBP12.2□□□□□ -0.46
SDC3-201ENST00000336798 NSMAFQ92636 917 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 ITPAQ9BY32 194 aa12.2□□□□□ -0.46
SDC3-201ENST00000336798 EIF2B3Q9NR50 452 aaKnown RBP12.2□□□□□ -0.46
SDC3-201ENST00000336798 IGLV3-22A0A075B6J6 115 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 M0R129 80 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 GRID2O43424 1007 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 H6PDO95479 791 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 PAK4O96013 591 aaPredicted RBP12.19□□□□□ -0.46
SDC3-201ENST00000336798 LPAL2Q16609 132 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 DPY19L1Q2PZI1 675 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 TMEM44Q2T9K0 475 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 OR2T5Q6IEZ7 315 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 TMCO2Q7Z6W1 182 aaPredicted RBP12.19□□□□□ -0.46
SDC3-201ENST00000336798 C12orf76Q8N812 135 aaPredicted RBP12.19□□□□□ -0.46
SDC3-201ENST00000336798 ZNF709Q8N972 641 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 LRRC57Q8N9N7 239 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 OR2T29Q8NH02 315 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 SCGB3A2Q96PL1 93 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 WDR6Q9NNW5 1121 aaKnown RBP12.19□□□□□ -0.46
SDC3-201ENST00000336798 IRS2Q9Y4H2 1338 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 OR6C74A6NCV1 312 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 SEC14L5O43304 696 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 AGR2O95994 175 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 ACADVLP49748 655 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 PLP2Q04941 152 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 LY6G5CQ5SRR4 150 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 COMTD1Q86VU5 262 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 RAB2BQ8WUD1 216 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 ZNF641Q96N77 438 aaPredicted RBP12.19□□□□□ -0.46
SDC3-201ENST00000336798 RBPJLQ9UBG7 517 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 AGLP35573 1532 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 ANKRD66B4E2M5 251 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 AHSGP02765 367 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 SLC11A1P49279 550 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 SLC39A4Q6P5W5 647 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 PAMR1Q6UXH9 720 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 SEC14L1Q92503 715 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 FCGR1BQ92637 280 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 FEZF1A0PJY2 475 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 ISPDA4D126 451 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 PROM1O43490 865 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 BRINP1O60477 761 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 CNTN5O94779 1100 aa12.19□□□□□ -0.46
SDC3-201ENST00000336798 DLDP09622 509 aaKnown RBP12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms