RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 BTRCQ9Y297 605 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 PBRM1Q86U86 1689 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 AFF2P51816 1311 aa7.4□□□□□ -1.22
LIMCH1-201ENST00000313860 TRAV39A0A0B4J263 110 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 ADAMDEC1O15204 470 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 RCBTB2O95199 551 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 OTCP00480 354 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 RARBP10826 455 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 HSD11B2P80365 405 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 KIAA0141Q14154 515 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 UBAP2LQ14157 1087 aaKnown RBP7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 PDIA6Q15084 440 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 ESCO2Q56NI9 601 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 TAS1R3Q7RTX0 852 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 LIX1LQ8IVB5 337 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 JOSD2Q8TAC2 188 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 PXYLP1Q8TE99 480 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 SYN2Q92777 582 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 SENP8Q96LD8 212 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 CD180Q99467 661 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 WDR77Q9BQA1 342 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC23A2Q9UGH3 650 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 PCDHB11Q9Y5F2 797 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 PNMA6EA0A0J9YXQ4 647 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 ITGA2BP08514 1039 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 PRB4P10163 310 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC6A2P23975 617 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 HIBADHP31937 336 aaKnown RBP7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 GCGRP47871 477 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 HNRNPDQ14103 355 aaKnown RBP7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 FGFBP1Q14512 234 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 NHSL2Q5HYW2 709 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 KIAA1614Q5VZ46 1190 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 VASNQ6EMK4 673 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 GPAT4Q86UL3 456 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 LRRC28Q86X40 367 aaPredicted RBP7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 OR5H2Q8NGV7 314 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 OR2T35Q8NGX2 323 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 CERS2Q96G23 380 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 IFT27Q9BW83 186 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC39A9Q9NUM3 307 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 KCNIP1Q9NZI2 227 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 STEAP1Q9UHE8 339 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 IL17BQ9UHF5 180 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 CPA4Q9UI42 421 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF780BQ9Y6R6 833 aa7.4□□□□□ -1.23
LIMCH1-201ENST00000313860 H7C2G1 150 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CIAO1O76071 339 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TNFSF4P23510 183 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CD34P28906 385 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC6A8P48029 635 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 NR2C2P49116 596 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 MPP1Q00013 466 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CAP1Q01518 475 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 C2orf80Q0P641 193 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ELP6Q0PNE2 266 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 EXOSC2Q13868 293 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 MON1BQ7L1V2 547 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 FAM129CQ86XR2 697 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ZNF679Q8IYX0 411 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CSGALNACT1Q8TDX6 532 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 GLYATL1Q969I3 302 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ADAD1Q96M93 576 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 AMDHD1Q96NU7 426 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SNX18Q96RF0 628 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 P2RX7Q99572 595 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 MRPL45Q9BRJ2 306 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TMEM27Q9HBJ8 222 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 MKKSQ9NPJ1 570 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TIGARQ9NQ88 270 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 B3GNT2Q9NY97 397 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 MTRRQ9UBK8 725 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 BARX2Q9UMQ3 279 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 PCDHA4Q9UN74 947 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 PLEKHG1Q9ULL1 1385 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 SLC16A4O15374 487 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ATMINO43313 823 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ODC1P11926 461 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 FMO1Q01740 532 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TARDBPQ13148 414 aaKnown RBP eCLIP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CHIT1Q13231 466 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ATP6AP1Q15904 470 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 CTC1Q2NKJ3 1217 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 PRAMEF13Q5VWM6 474 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 GDPD3Q7L5L3 318 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TSEN54Q7Z6J9 526 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TSPYL5Q86VY4 417 aaPredicted RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 C1orf52Q8N6N3 182 aaKnown RBP7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 ATP6V0D2Q8N8Y2 350 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 GGHQ92820 318 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 MOCOSQ96EN8 888 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 XAGE2Q96GT9 111 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 PPP3R2Q96LZ3 170 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 PAFAH2Q99487 392 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 MGLLQ99685 303 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 OR51E2Q9H255 320 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 KCNF1Q9H3M0 494 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 TVP23BQ9NYZ1 205 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 LEMD3Q9Y2U8 911 aa7.39□□□□□ -1.23
LIMCH1-201ENST00000313860 RTCBQ9Y3I0 505 aaKnown RBP7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms