RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 Q9N2J8 555 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 FANCFQ9NPI8 374 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 KCNS2Q9ULS6 477 aa13.42□□□□□ -0.26
CSPG4-201ENST00000308508 ERCC6L2Q5T890 1561 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 PCDH17O14917 1159 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 NDUFS1P28331 727 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 RAB4BP61018 213 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 SNTB2Q13425 540 aaKnown RBP13.41□□□□□ -0.26
CSPG4-201ENST00000308508 HS3ST5Q8IZT8 346 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 CDC14AQ9UNH5 594 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 STXBP5LQ9Y2K9 1186 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 MYH13Q9UKX3 1938 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 AMY2BP19961 511 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 CRISP1P54107 249 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 EMX2Q04743 252 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 GPR139Q6DWJ6 353 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 SLC39A4Q6P5W5 647 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 PXKQ7Z7A4 578 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 C1orf52Q8N6N3 182 aaKnown RBP13.41□□□□□ -0.26
CSPG4-201ENST00000308508 PLA2G15Q8NCC3 412 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 AKT1S1Q96B36 256 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 CROCCQ5TZA2 2017 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 CD3GP09693 182 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 CELP19835 753 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 SCGB2A2Q13296 93 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 FGL2Q14314 439 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 WDR53Q7Z5U6 358 aaPredicted RBP13.41□□□□□ -0.26
CSPG4-201ENST00000308508 LGALS12Q96DT0 336 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 ZFP57Q9NU63 452 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 ZNF701Q9NV72 531 aaPredicted RBP13.41□□□□□ -0.26
CSPG4-201ENST00000308508 FAIMQ9NVQ4 179 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 TMPRSS11EQ9UL52 423 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 C1orf167Q5SNV9 1468 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 GXYLT2A0PJZ3 443 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 CTHP32929 405 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 PPP5CP53041 499 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 PRMT2P55345 433 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 GK2Q14410 553 aaPredicted RBP13.41□□□□□ -0.26
CSPG4-201ENST00000308508 ZNF674Q2M3X9 581 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 RAB41Q5JT25 222 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 ANKRD54Q6NXT1 300 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 CDCA5Q96FF9 252 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 TTYH3Q9C0H2 523 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 ABCG5Q9H222 651 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 NOCTQ9UK39 431 aaKnown RBP13.41□□□□□ -0.26
CSPG4-201ENST00000308508 STMND1H3BQB6 276 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 HAS3O00219 553 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 SYN3O14994 580 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 JUNP05412 331 aaKnown RBP13.41□□□□□ -0.26
CSPG4-201ENST00000308508 RAB3BP20337 219 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 HSD11B2P80365 405 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 SNTA1Q13424 505 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 LRRC32Q14392 662 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 NUS1Q96E22 293 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 PCED1BQ96HM7 432 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 DHDHQ9UQ10 334 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 SMIM28A0A1B0GU29 152 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 MUSKO15146 869 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 RAB4AP20338 218 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 PRKACBP22694 351 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 CLCA4Q14CN2 919 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 BRF2Q9HAW0 419 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 PCYT1BQ9Y5K3 369 aaPredicted RBP13.41□□□□□ -0.26
CSPG4-201ENST00000308508 AGLP35573 1532 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 PTPRMP28827 1452 aa13.41□□□□□ -0.26
CSPG4-201ENST00000308508 GP1BBP13224 206 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 SLC27A4Q6P1M0 643 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 TMEM205Q6UW68 189 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 OR2T33Q8NG76 320 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 TERB2Q8NHR7 220 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 BORCS7Q96B45 105 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 MEPEQ9NQ76 525 aaPredicted RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 H3BSH0 61 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 DIRAS1O95057 198 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 CST3P01034 146 aaPredicted RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 GJB1P08034 283 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 IDH3GP51553 393 aaPredicted RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 CYCSP99999 105 aaKnown RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 LASP1Q14847 261 aaKnown RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 CEP68Q76N32 757 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 MOAP1Q96BY2 351 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 PYCR2Q96C36 320 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 MUS81Q96NY9 551 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 CPNE5Q9HCH3 593 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 A8MVJ9 347 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 NIPSNAP2O75323 286 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 CDKN1CP49918 316 aaPredicted RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 CXCL9Q07325 125 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 RABL3Q5HYI8 236 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 GET4Q7L5D6 327 aaPredicted RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 CEACAM19Q7Z692 300 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 C7orf57Q8NEG2 295 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 OR8J3Q8NGG0 315 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 DUS2Q9NX74 493 aaKnown RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 SULT1C2O00338 296 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 KIAA0513O60268 411 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 PPP1R8Q12972 351 aaKnown RBP13.4□□□□□ -0.26
CSPG4-201ENST00000308508 TAC4Q86UU9 113 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 ARHGAP12Q8IWW6 846 aa13.4□□□□□ -0.26
CSPG4-201ENST00000308508 ZNF599Q96NL3 588 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms