RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 ZSCAN5BA6NJL1 495 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 FLRT2O43155 660 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 OR1I1O60431 355 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 KCNA5P22460 613 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 MAPK3P27361 379 aaPredicted RBP12.4□□□□□ -0.42
COL3A1-201ENST00000304636 VIPR1P32241 457 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 MAGEA6P43360 314 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 OR3A3P47888 321 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 OR3A2P47893 321 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 CD47Q08722 323 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 PUM1Q14671 1186 aaKnown RBP eCLIP12.4□□□□□ -0.42
COL3A1-201ENST00000304636 PON3Q15166 354 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 GPR68Q15743 365 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 PLEKHS1Q5SXH7 462 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF227Q86WZ6 799 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 GID4Q8IVV7 300 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 SDR39U1Q9NRG7 319 aaPredicted RBP12.4□□□□□ -0.42
COL3A1-201ENST00000304636 IGSF5Q9NSI5 407 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 RIMS3Q9UJD0 308 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 IFT52Q9Y366 437 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 SH3D21A4FU49 640 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF670-ZNF695F2Z2N8 137 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 HTR2BP41595 481 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 PGGT1BP53609 377 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 CAMK1Q14012 370 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 TPGS2Q68CL5 300 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 TMIGD1Q6UXZ0 262 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 C14orf80Q86SX3 495 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 CPA6Q8N4T0 437 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 IL12RB2Q99665 862 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 IGFLR1Q9H665 355 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 AGPAT4Q9NRZ5 378 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 C2orf92A0A1B0GVN3 265 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 PROM1O43490 865 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 PRKYO43930 277 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 NUAK1O60285 661 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 SCGNO76038 276 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 APODP05090 189 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 CAPN3P20807 821 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 HOXD12P35452 270 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 FLT3LGP49771 235 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 OR4D1Q15615 310 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 PSRC1Q6PGN9 363 aaPredicted RBP12.4□□□□□ -0.42
COL3A1-201ENST00000304636 ADAD1Q96M93 576 aaKnown RBP12.4□□□□□ -0.42
COL3A1-201ENST00000304636 B3GNT4Q9C0J1 378 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 OR51B5Q9H339 312 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 SLA2Q9H6Q3 261 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 FOLH1BQ9HBA9 442 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 RPL17P18621 184 aaKnown RBP12.4□□□□□ -0.42
COL3A1-201ENST00000304636 CELP19835 753 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 DCKP27707 260 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 NKX2-5P52952 324 aaPredicted RBP12.4□□□□□ -0.42
COL3A1-201ENST00000304636 VLDLRP98155 873 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 IRAK1BP1Q5VVH5 260 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 SLC27A4Q6P1M0 643 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 ISCA2Q86U28 154 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 PAPD5Q8NDF8 572 aaKnown RBP12.4□□□□□ -0.42
COL3A1-201ENST00000304636 GRHL3Q8TE85 626 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF486Q96H40 463 aaPredicted RBP12.4□□□□□ -0.42
COL3A1-201ENST00000304636 SH3YL1Q96HL8 342 aaPredicted RBP12.4□□□□□ -0.42
COL3A1-201ENST00000304636 ZNF778Q96MU6 729 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 TAPBPLQ9BX59 468 aa12.4□□□□□ -0.42
COL3A1-201ENST00000304636 NOVP48745 357 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 CLDN8P56748 225 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 PITX1P78337 314 aaPredicted RBP12.39□□□□□ -0.43
COL3A1-201ENST00000304636 MC1RQ01726 317 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 SP3Q02447 781 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 MSANTD1Q6ZTZ1 278 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 OR4K1Q8NGD4 311 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 RPLP0P6Q8NHW5 317 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 GAB3Q8WWW8 586 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 CRYGNQ8WXF5 182 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 JPH3Q8WXH2 748 aaPredicted RBP12.39□□□□□ -0.43
COL3A1-201ENST00000304636 HYLS1Q96M11 299 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 SRMSQ9H3Y6 488 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 SACM1LQ9NTJ5 587 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 DLGAP4Q9Y2H0 992 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 TCRBV3S1A0A5B6 114 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 ERI3O43414 337 aaKnown RBP12.39□□□□□ -0.43
COL3A1-201ENST00000304636 FGF4P08620 206 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 HSD3B1P14060 373 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 HSD3B2P26439 372 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 C22orf42Q6IC83 251 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 BAIAP2L2Q6UXY1 529 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 CYP4V2Q6ZWL3 525 aaPredicted RBP12.39□□□□□ -0.43
COL3A1-201ENST00000304636 ZNF767PQ75MW2 155 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 IQCF2Q8IXL9 164 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 PROKR2Q8NFJ6 384 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 IL36AQ9UHA7 158 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 KDM3BQ7LBC6 1761 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 SLC16A5O15375 505 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 RETP07949 1114 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 RHCEP18577 417 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 KLHL26Q53HC5 615 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 YIPF7Q8N8F6 280 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 OR52E4Q8NGH9 312 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 SHKBP1Q8TBC3 707 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 SMPDL3AQ92484 453 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 PCYT2Q99447 389 aa12.39□□□□□ -0.43
COL3A1-201ENST00000304636 MARCH4Q9P2E8 410 aaPredicted RBP12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms