RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 HLA-DPA1P20036 260 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 NNMTP40261 264 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 MAP2K6P52564 334 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 ABATP80404 500 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 RPA4Q13156 261 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 GALEQ14376 348 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 SNAPC1Q16533 368 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 ASB18Q6ZVZ8 466 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 LIX1LQ8IVB5 337 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 UMODL1-AS1Q8N2C9 162 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 KLHDC9Q8NEP7 349 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 CEP76Q8TAP6 659 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 ZNF431Q8TF32 576 aaPredicted RBP12.94□□□□□ -0.34
SKA3-201ENST00000298260 MARC2Q969Z3 335 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 CDCA4Q9BXL8 241 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 TXNL4BQ9NX01 149 aaKnown RBP12.94□□□□□ -0.34
SKA3-201ENST00000298260 RBPJLQ9UBG7 517 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 SNX11Q9Y5W9 270 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 TRAV6A0A075B6T7 132 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 A0A0G2JLL6 359 aaPredicted RBP12.94□□□□□ -0.34
SKA3-201ENST00000298260 TEX51A0A1B0GUA7 166 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 KCNE1P15382 129 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 OR1E1P30953 314 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 KIR3DL1P43629 444 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 CLDN8P56748 225 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 EFEMP1Q12805 493 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 IL18Q14116 193 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 ZNF57Q68EA5 555 aaPredicted RBP12.94□□□□□ -0.34
SKA3-201ENST00000298260 FAM122CQ6P4D5 195 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 CNIH2Q6PI25 160 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 AFTPHQ6ULP2 937 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 PRRT2Q7Z6L0 340 aaPredicted RBP12.94□□□□□ -0.34
SKA3-201ENST00000298260 NAGSQ8N159 534 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 OR7D4Q8NG98 312 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 OR52P1PQ8NH57 321 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 PIH1D2Q8WWB5 315 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 METTL2AQ96IZ6 378 aaKnown RBP12.94□□□□□ -0.34
SKA3-201ENST00000298260 RPRD1AQ96P16 312 aaPredicted RBP12.94□□□□□ -0.34
SKA3-201ENST00000298260 EPYCQ99645 322 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 SPON2Q9BUD6 331 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 ELOVL6Q9H5J4 265 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 TMEM45AQ9NWC5 275 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 FZD4Q9ULV1 537 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 PRKAB1Q9Y478 270 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 DOCK3Q8IZD9 2030 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 MAGEB17A8MXT2 336 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 RAMP2O60895 175 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 LAMP1P11279 417 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 AVPR1BP47901 424 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 EPHA5P54756 1037 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 RAB8AP61006 207 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 C2orf80Q0P641 193 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 DDX39BQ13838 428 aaKnown RBP12.94□□□□□ -0.34
SKA3-201ENST00000298260 GRM7Q14831 915 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 AANATQ16613 207 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 BCL2L15Q5TBC7 163 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 MLIPQ5VWP3 458 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 CST9Q5W186 159 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 TYW3Q6IPR3 259 aaKnown RBP12.94□□□□□ -0.34
SKA3-201ENST00000298260 BRAT1Q6PJG6 821 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 ZNF852Q6ZMS4 543 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 SERPINA11Q86U17 422 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 CPA6Q8N4T0 437 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 DENND6BQ8NEG7 585 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 POF1BQ8WVV4 589 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 BTN2A2Q8WVV5 523 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 SLC25A46Q96AG3 418 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 ZYG11BQ9C0D3 744 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 ERVMER34-1Q9H9K5 563 aa12.94□□□□□ -0.34
SKA3-201ENST00000298260 SLC28A1O00337 649 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 TOXO94900 526 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 GASTP01350 101 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 MAD2L1Q13257 205 aaPredicted RBP12.93□□□□□ -0.34
SKA3-201ENST00000298260 EIF4HQ15056 248 aaKnown RBP12.93□□□□□ -0.34
SKA3-201ENST00000298260 OR2G6Q5TZ20 316 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 TADA1Q96BN2 335 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 TESCQ96BS2 214 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 WDFY2Q96P53 400 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 TCF25Q9BQ70 676 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 C2orf49Q9BVC5 232 aaPredicted RBP12.93□□□□□ -0.34
SKA3-201ENST00000298260 TPT1P8Q9HAU6 139 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 RBFOX1Q9NWB1 397 aaKnown RBP12.93□□□□□ -0.34
SKA3-201ENST00000298260 ELF5Q9UKW6 265 aaPredicted RBP12.93□□□□□ -0.34
SKA3-201ENST00000298260 LSM2Q9Y333 95 aaKnown RBP12.93□□□□□ -0.34
SKA3-201ENST00000298260 PRSS21Q9Y6M0 314 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 TRIP12Q14669 1992 aaPredicted RBP12.93□□□□□ -0.34
SKA3-201ENST00000298260 CCL15-CCL14A0A0B4J2E2 113 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 INMT-MINDY4F8WBC2 141 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 SLC9A3R1O14745 358 aaPredicted RBP12.93□□□□□ -0.34
SKA3-201ENST00000298260 TPST2O60704 377 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 CXCL3P19876 107 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 IL32P24001 234 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 CCL15Q16663 113 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 TTLL9Q3SXZ7 439 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 COX20Q5RI15 118 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 CFAP77Q6ZQR2 320 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 CHMP1BQ7LBR1 199 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 ZNF366Q8N895 744 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 AQP11Q8NBQ7 271 aa12.93□□□□□ -0.34
SKA3-201ENST00000298260 C1GALT1C1Q96EU7 318 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms