RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 A0A087WUU8 490 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 EI24O14681 340 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 LRRTM2O43300 516 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 PRKYO43930 277 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 CBSLP0DN79 551 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 BDKRB2P30411 391 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 CBSP35520 551 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 AFF3P51826 1226 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 EXOC3L2Q2M3D2 409 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 CELF3Q5SZQ8 465 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 ARHGAP40Q5TG30 622 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 HS6ST2Q96MM7 605 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 ACO2Q99798 780 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 TSPAN10Q9H1Z9 355 aaPredicted RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 TAS2R14Q9NYV8 317 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 C12orf71A8MTZ7 269 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 CNOT4O95628 575 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 GAD2Q05329 585 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 PLPP4Q5VZY2 271 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 KANK2Q63ZY3 851 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 VITQ6UXI7 678 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 MOB1BQ7L9L4 216 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 ZSWIM9Q86XI8 627 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 PRSS58Q8IYP2 241 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 OR56A3Q8NH54 315 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 TAAR8Q969N4 342 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 C3orf49Q96BT1 292 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF75AQ96N20 296 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 TRMT61BQ9BVS5 477 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 TFB2MQ9H5Q4 396 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 CNTN6Q9UQ52 1028 aa13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 URB1O60287 2271 aaKnown RBP13.5□□□□□ -0.25
CCDC88A-201ENST00000263630 LRRC32Q14392 662 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF367Q7RTV3 350 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC43A2Q8N370 569 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 CASD1Q96PB1 797 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 XPNPEP1Q9NQW7 623 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC9A9Q8IVB4 645 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 RPS10P5Q9NQ39 176 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 PTBP2Q9UKA9 531 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 RAB3BP20337 219 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 SERPINF1P36955 418 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 CEACAM20Q6UY09 585 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 OR5H2Q8NGV7 314 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC35C1Q96A29 364 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 SERTAD3Q9UJW9 196 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 WDR45Q9Y484 360 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 A0A1W2PQH9 124 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 TRAPPC13A5PLN9 417 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 BCHEP06276 602 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 LSSP48449 732 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 EEFSECP57772 596 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 TMPRSS9Q7Z410 1059 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 PDSS2Q86YH6 399 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 LIX1LQ8IVB5 337 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 PYROXD2Q8N2H3 581 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 RAB19A4D1S5 217 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 MT-CYBP00156 380 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 GJB1P08034 283 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 ARL6IP1Q15041 203 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 ADGRD1Q6QNK2 874 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF641Q96N77 438 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 B3GNT2Q9NY97 397 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 ZIM2Q9NZV7 527 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 SIRPGQ9P1W8 387 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 FBXO7Q9Y3I1 522 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 LRRC7Q96NW7 1537 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 A6NLC8 198 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 PHYHO14832 338 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 CAPN5O15484 640 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 DEFA6Q01524 100 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 MPP7Q5T2T1 576 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 AADACL2Q6P093 401 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 ZC3HAV1Q7Z2W4 902 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 NTAN1Q96AB6 310 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 KCNJ16Q9NPI9 418 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 EIF2B4Q9UI10 523 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 COL1A2P08123 1366 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 FAM170BA6NMN3 283 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 PRKACAP17612 351 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 LAG3P18627 525 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 RBM39Q14498 530 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 ZFP82Q8N141 532 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 SRA1Q9HD15 236 aaKnown RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 POMPQ9Y244 141 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 EME2A4GXA9 379 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 SOX1O00570 391 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 TLX2O43763 284 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 RFTN1Q14699 578 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 DUOXA1Q1HG43 343 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 SPRYD4Q8WW59 207 aaPredicted RBP13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 NUS1Q96E22 293 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF681Q96N22 645 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 PKP4Q99569 1192 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 ZNF442Q9H7R0 627 aa13.49□□□□□ -0.25
CCDC88A-201ENST00000263630 SLC35F4A4IF30 521 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 VEGFDO43915 354 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 DNAJB5O75953 348 aa13.48□□□□□ -0.25
CCDC88A-201ENST00000263630 GOT2P00505 430 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms