RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PCDHGB3Q9Y5G1 929 aa20.43■□□□□ 0.86
TRIM28-201ENST00000253024 PLXNB3Q9ULL4 1909 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 TRIOO75962 3097 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 ANKDD1BA6NHY2 528 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 SSX4O60224 188 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 LSM11P83369 360 aaKnown RBP eCLIP20.42■□□□□ 0.862e-9■□□□□ 10.1
TRIM28-201ENST00000253024 DEFB115Q30KQ5 88 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 PROX2Q3B8N5 592 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 ZNF605Q86T29 641 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 ELMOD1Q8N336 334 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 AQP11Q8NBQ7 271 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 ITPAQ9BY32 194 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 MIEF1Q9NQG6 463 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 GLOD5A6NK44 160 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 MPC1LP0DKB6 136 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 SELENOWP63302 87 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 PARS2Q7L3T8 475 aaKnown RBP20.42■□□□□ 0.86
TRIM28-201ENST00000253024 OR52E4Q8NGH9 312 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 ZNF675Q8TD23 568 aa20.42■□□□□ 0.86
TRIM28-201ENST00000253024 WWP2O00308 870 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 SLCO2B1O94956 709 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 IMPDH2P12268 514 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 SPNP16150 400 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 NPPBP16860 134 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 SLC7A9P82251 487 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 ARMCX4Q5H9R4 360 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 ZC3H12BQ5HYM0 836 aaKnown RBP20.41■□□□□ 0.86
TRIM28-201ENST00000253024 GRHL2Q6ISB3 625 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 PRSS48Q7RTY5 328 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 SVOPQ8N4V2 548 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 YIPF4Q9BSR8 244 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 LRRTM2O43300 516 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 JUNDP17535 347 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 SYN1P17600 705 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 CSTF3Q12996 717 aaKnown RBP20.41■□□□□ 0.86
TRIM28-201ENST00000253024 IL18R1Q13478 541 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 HENMT1Q5T8I9 393 aaKnown RBP20.41■□□□□ 0.86
TRIM28-201ENST00000253024 ERICH5Q6P6B1 374 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 SLCO4C1Q6ZQN7 724 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 C12orf40Q86WS4 652 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 WDR12Q9GZL7 423 aaKnown RBP20.41■□□□□ 0.86
TRIM28-201ENST00000253024 SPHK2Q9NRA0 654 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 TDP1Q9NUW8 608 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 DNAJC27Q9NZQ0 273 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 ASF1AQ9Y294 204 aa20.41■□□□□ 0.86
TRIM28-201ENST00000253024 PRKRAO75569 313 aaKnown RBP20.4■□□□□ 0.86
TRIM28-201ENST00000253024 SEMG1P04279 462 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 BCHEP06276 602 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 AZGP1P25311 298 aaKnown RBP20.4■□□□□ 0.86
TRIM28-201ENST00000253024 CD40LGP29965 261 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 NNMTP40261 264 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 CDK6Q00534 326 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 GCNT6Q5T4J0 391 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 DEF8Q6ZN54 512 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 PHF10Q8WUB8 498 aaKnown RBP20.4■□□□□ 0.86
TRIM28-201ENST00000253024 LMLNQ96KR4 655 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 VPS35Q96QK1 796 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 ZNF226Q9NYT6 803 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 AP3M1Q9Y2T2 418 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 PLXND1Q9Y4D7 1925 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 TRBC2A0A5B9 178 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 PIPSLA2A3N6 862 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 SOBPA7XYQ1 873 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 NPC1O15118 1278 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 PSIP1O75475 530 aaKnown RBP20.4■□□□□ 0.86
TRIM28-201ENST00000253024 LATS1O95835 1130 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 MVDP53602 400 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 FAHD1Q6P587 224 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 LIPIQ6XZB0 460 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 ADCK2Q7Z695 626 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 FAM9CQ8IZT9 166 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 CPXM2Q8N436 756 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 B3GNT7Q8NFL0 401 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 OR5AR1Q8NGP9 310 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 FBLIM1Q8WUP2 373 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 EXOSC8Q96B26 276 aaKnown RBP20.4■□□□□ 0.86
TRIM28-201ENST00000253024 SLC6A16Q9GZN6 736 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 FAM32AQ9Y421 112 aaKnown RBP20.4■□□□□ 0.86
TRIM28-201ENST00000253024 H3BN98 237 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 RGS5O15539 181 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 GASTP01350 101 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 CTSAP10619 480 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 MXD1Q05195 221 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 IFI44LQ53G44 452 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 CHTF18Q8WVB6 975 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 IL36AQ9UHA7 158 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 MYO10Q9HD67 2058 aa20.4■□□□□ 0.86
TRIM28-201ENST00000253024 CEP290O15078 2479 aa20.39■□□□□ 0.86
TRIM28-201ENST00000253024 NOTCH4Q99466 2003 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 ZNF197O14709 1029 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 CYP2A6P11509 494 aaPredicted RBP20.39■□□□□ 0.85
TRIM28-201ENST00000253024 SOX3P41225 446 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 PRKAG1P54619 331 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 ZNF763Q0D2J5 394 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 TSTQ16762 297 aaKnown RBP20.39■□□□□ 0.85
TRIM28-201ENST00000253024 GRASPQ7Z6J2 395 aaPredicted RBP20.39■□□□□ 0.85
TRIM28-201ENST00000253024 IQCF1Q8N6M8 205 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 DNAJB8Q8NHS0 232 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 ZNF566Q969W8 418 aa20.39■□□□□ 0.85
TRIM28-201ENST00000253024 HRASLS5Q96KN8 279 aa20.39■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms