RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 CHPFQ8IZ52 775 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 OXR1Q8N573 874 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 KRTCAP2Q8N6L1 136 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 NATD1Q8N6N6 113 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 DENND6BQ8NEG7 585 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 TRPV1Q8NER1 839 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 UTP15Q8TED0 518 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 MRPS31Q92665 395 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 TMEM159Q96B96 161 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 YIPF6Q96EC8 236 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CCDC32Q9BV29 185 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 SLC12A9Q9BXP2 914 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PRRG3Q9BZD7 231 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CACYBPQ9HB71 228 aaKnown RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 ACOT13Q9NPJ3 140 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 AHSPQ9NZD4 102 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 HECAQ9UBI9 543 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 EVLQ9UI08 416 aaPredicted RBP3.84□□□□□ -1.79
SCN1A-214ENST00000637038 BTNL2Q9UIR0 455 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PCDHB11Q9Y5F2 797 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 PCDHGA10Q9Y5H3 936 aa3.84□□□□□ -1.79
SCN1A-214ENST00000637038 CROCCQ5TZA2 2017 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 LOC105378220A0A1B0GUY1 285 aaPredicted RBP3.84□□□□□ -1.8
SCN1A-214ENST00000637038 SH3D21A4FU49 640 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 HTR3EA5X5Y0 456 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 TMX2-CTNND1H3BSU7 103 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 LILRB5O75023 590 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PDE9AO76083 593 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PDYNP01213 254 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PRLP01236 227 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 C1SP09871 688 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 JUPP14923 745 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 GNSP15586 552 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 AGXTP21549 392 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 NR4A1P22736 598 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PCGF2P35227 344 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 POLR2IP36954 125 aaKnown RBP3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PIGAP37287 484 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 NNMTP40261 264 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 IDH2P48735 452 aaKnown RBP3.84□□□□□ -1.8
SCN1A-214ENST00000637038 CDKN1CP49918 316 aaPredicted RBP3.84□□□□□ -1.8
SCN1A-214ENST00000637038 IST1P53990 364 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 TPTEP56180 551 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PER3P56645 1201 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 VBP1P61758 197 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 HSPA14Q0VDF9 509 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 FOXC1Q12948 553 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 CHIT1Q13231 466 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 MLF2Q15773 248 aaPredicted RBP3.84□□□□□ -1.8
SCN1A-214ENST00000637038 CHRNA6Q15825 494 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 CTU2Q2VPK5 515 aaKnown RBP3.84□□□□□ -1.8
SCN1A-214ENST00000637038 MPPE1Q53F39 396 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 TOR1AIP1Q5JTV8 583 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 UBE2UQ5VVX9 321 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 OR4F3Q6IEY1 312 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 TPGS1Q6ZTW0 290 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 TPRG1Q6ZUI0 275 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 CBLL1Q75N03 491 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF280BQ86YH2 543 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PHACTR4Q8IZ21 702 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PNPLA1Q8N8W4 532 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 L3MBTL4Q8NA19 623 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 OR10G2Q8NGC3 310 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 OR4A15Q8NGL6 344 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 ZFP90Q8TF47 636 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 GEMIN6Q8WXD5 167 aaKnown RBP3.84□□□□□ -1.8
SCN1A-214ENST00000637038 SGCDQ92629 289 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 IRF7Q92985 503 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PPP1R16AQ96I34 528 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 TEFMQ96QE5 360 aaKnown RBP3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PITX2Q99697 317 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 BTBD2Q9BX70 525 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 ZCCHC2Q9C0B9 1178 aaKnown RBP3.84□□□□□ -1.8
SCN1A-214ENST00000637038 REXO4Q9GZR2 422 aaKnown RBP3.84□□□□□ -1.8
SCN1A-214ENST00000637038 TRIM45Q9H8W5 580 aaPredicted RBP3.84□□□□□ -1.8
SCN1A-214ENST00000637038 RASSF1Q9NS23 344 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PLCXD1Q9NUJ7 323 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF225Q9UK10 706 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 USP22Q9UPT9 525 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PRELID1Q9Y255 219 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 MED16Q9Y2X0 877 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 GRIP1Q9Y3R0 1128 aa3.84□□□□□ -1.8
SCN1A-214ENST00000637038 PLXND1Q9Y4D7 1925 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 MN1Q10571 1320 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-214ENST00000637038 LOC100506127A0A0U1RQW1 187 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SERTM1A2A2V5 107 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 ZNF840PA6NDX5 716 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 AGAP5A6NIR3 686 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 IQCF5A8MTL0 148 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 FAM25AB3EWG3 89 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 FAM25CB3EWG5 89 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 FAM25GB3EWG6 89 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 IDH3BO43837 385 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 NUAK1O60285 661 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 STC2O76061 302 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CCNB2O95067 398 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 LRATO95237 230 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 CD72P21854 359 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 SLC6A4P31645 630 aa3.83□□□□□ -1.8
SCN1A-214ENST00000637038 IDUAP35475 653 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms