RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 FUT10Q6P4F1 479 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 VRK3Q8IV63 474 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 CELF5Q8N6W0 485 aaKnown RBP17.63■□□□□ 0.41
UPF1-210ENST00000600689 OR9Q1Q8NGQ5 310 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 TMCO6Q96DC7 493 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 NXF2Q9GZY0 626 aaKnown RBP17.63■□□□□ 0.41
UPF1-210ENST00000600689 CD84Q9UIB8 345 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 PCDHGA2Q9Y5H1 932 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 CLCA3PQ9Y6N3 262 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 GREB1Q4ZG55 1949 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 AKR7A2O43488 359 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 CDRT1O95170 752 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 INHAP05111 366 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 CORO1AP31146 461 aaKnown RBP17.63■□□□□ 0.41
UPF1-210ENST00000600689 SLC11A2P49281 568 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 GNG2P59768 71 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 TTLL9Q3SXZ7 439 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 AQP11Q8NBQ7 271 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 SUN5Q8TC36 379 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 MED8Q96G25 268 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 DIRAS2Q96HU8 199 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 DUSP26Q9BV47 211 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 CENPBD1B2RD01 187 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 TUFMP49411 452 aaKnown RBP17.63■□□□□ 0.41
UPF1-210ENST00000600689 IRF8Q02556 426 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 ACSM2AQ08AH3 577 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 ZNF79Q15937 498 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 PYDC2Q56P42 97 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 SLX4IPQ5VYV7 408 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 FRG2Q64ET8 278 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 ACSM2BQ68CK6 577 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 NOXA1Q86UR1 476 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 TAGAPQ8N103 731 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 NFKBIDQ8NI38 313 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 FRG2BQ96QU4 278 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 PKP4Q99569 1192 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 CRNNQ9UBG3 495 aaPredicted RBP17.63■□□□□ 0.41
UPF1-210ENST00000600689 RAB23Q9ULC3 237 aa17.63■□□□□ 0.41
UPF1-210ENST00000600689 ALX3O95076 343 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 HIST1H2AGP0C0S8 130 aaPredicted RBP17.62■□□□□ 0.41
UPF1-210ENST00000600689 IL1RNP18510 177 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 ATF6P18850 670 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 HIST1H2ADP20671 130 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 IQCCQ4KMZ1 466 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 C7orf57Q8NEG2 295 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 HIST1H2AHQ96KK5 128 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 HIST1H2AJQ99878 128 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 H2AFJQ9BTM1 129 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 DOHHQ9BU89 302 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 C11orf54Q9H0W9 315 aaPredicted RBP17.62■□□□□ 0.41
UPF1-210ENST00000600689 DKK3Q9UBP4 350 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 GLYATL1P3A0A0U1RQE8 302 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 SMAD6O43541 496 aaKnown RBP17.62■□□□□ 0.41
UPF1-210ENST00000600689 ICMTO60725 284 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 CYP17A1P05093 508 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 BPIP17213 487 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 HOXB9P17482 250 aaPredicted RBP17.62■□□□□ 0.41
UPF1-210ENST00000600689 GPX2P18283 190 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 TIE1P35590 1138 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 HMGCLP35914 325 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 PRIM2P49643 509 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 GPRC6AQ5T6X5 926 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 TMIGD1Q6UXZ0 262 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 WDR53Q7Z5U6 358 aaPredicted RBP17.62■□□□□ 0.41
UPF1-210ENST00000600689 DTX3Q8N9I9 347 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 OR4A15Q8NGL6 344 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 SNAPC3Q92966 411 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 MYO19Q96H55 970 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 SCLYQ96I15 445 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 TEKT2Q9UIF3 430 aa17.62■□□□□ 0.41
UPF1-210ENST00000600689 YARS2Q9Y2Z4 477 aaKnown RBP17.62■□□□□ 0.41
UPF1-210ENST00000600689 ANKRD36A6QL64 1941 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 H3BN98 237 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 GAPDHSO14556 408 aaPredicted RBP17.61■□□□□ 0.41
UPF1-210ENST00000600689 PLD2O14939 933 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 ENTPD6O75354 484 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 SELPP16109 830 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 ATP5C1P36542 298 aaKnown RBP17.61■□□□□ 0.41
UPF1-210ENST00000600689 CDH4P55283 916 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 XKR6Q5GH73 641 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 PDZK1Q5T2W1 519 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 ELMOD2Q8IZ81 293 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 HS6ST3Q8IZP7 471 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 C1orf52Q8N6N3 182 aaKnown RBP17.61■□□□□ 0.41
UPF1-210ENST00000600689 GABARAPL3Q9BY60 117 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 PCDH10Q9P2E7 1040 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 PRAMEF25A6NGN4 478 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 C12orf71A8MTZ7 269 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 CCNB2O95067 398 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 CD160O95971 181 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 SEMG1P04279 462 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 PRPS1L1P21108 318 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 CBLP22681 906 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 MYL9P24844 172 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 CCR7P32248 378 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 GPR17Q13304 367 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 IER5LQ5T953 404 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 PIH1D2Q8WWB5 315 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 CMTM7Q96FZ5 175 aa17.61■□□□□ 0.41
UPF1-210ENST00000600689 GABRR3A8MPY1 467 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms