RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 SLX1AQ9BQ83 275 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 TMEM246Q9BRR3 403 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 TTYH2Q9BSA4 534 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 LSM7Q9UK45 103 aaKnown RBP14.68□□□□□ -0.06
UPF1-204ENST00000596842 H3BUI4 141 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 ITGA1P56199 1179 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 WNT3P56703 355 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 RACK1P63244 317 aaKnown RBP14.68□□□□□ -0.06
UPF1-204ENST00000596842 RGNQ15493 299 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 C5orf22Q49AR2 442 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 MMAAQ8IVH4 418 aaKnown RBP14.68□□□□□ -0.06
UPF1-204ENST00000596842 NPAS3Q8IXF0 933 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 SLC34A3Q8N130 599 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 CADM2Q8N3J6 435 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 LILRB4Q8NHJ6 448 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 IPCEF1Q8WWN9 437 aaPredicted RBP14.68□□□□□ -0.06
UPF1-204ENST00000596842 SORCS1Q8WY21 1168 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 CLSTN3Q9BQT9 956 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 SLC35A5Q9BS91 424 aa14.68□□□□□ -0.06
UPF1-204ENST00000596842 MRPL9Q9BYD2 267 aaKnown RBP14.68□□□□□ -0.06
UPF1-204ENST00000596842 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP14.67□□□□□ -0.06
UPF1-204ENST00000596842 RPLP2P05387 115 aaKnown RBP14.67□□□□□ -0.06
UPF1-204ENST00000596842 ADORA3P0DMS8 318 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 ATP1B2P14415 290 aaPredicted RBP14.67□□□□□ -0.06
UPF1-204ENST00000596842 ETV3P41162 512 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 ERICH5Q6P6B1 374 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 RNF130Q86XS8 419 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 CYP4Z2PQ8N1L4 340 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 ASB11Q8WXH4 323 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 ZSCAN5AQ9BUG6 496 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 SLC12A9Q9BXP2 914 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 MMP27Q9H306 513 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 SUV39H2Q9H5I1 410 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 SNTG1Q9NSN8 517 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 RNF186Q9NXI6 227 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 OSGIN1Q9UJX0 560 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 A0A0C4DFX4 3053 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 CLCA1A8K7I4 914 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 SLC16A8O95907 504 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 SOX6P35712 828 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 SOX3P41225 446 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 KCNJ10P78508 379 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 TPRG1Q6ZUI0 275 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 B3GNT7Q8NFL0 401 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 SAMD11Q96NU1 681 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 DOHHQ9BU89 302 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 DNAJC27Q9NZQ0 273 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 NDUFAF4Q9P032 175 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 PCDHGB1Q9Y5G3 927 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 LYVE1Q9Y5Y7 322 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 CKAP5Q14008 2032 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 METTL15A6NJ78 407 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 WWP2O00308 870 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 IGFBP1P08833 259 aaPredicted RBP14.67□□□□□ -0.06
UPF1-204ENST00000596842 SNRPD1P62314 119 aaKnown RBP14.67□□□□□ -0.06
UPF1-204ENST00000596842 HBA1P69905 142 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 CAP1Q01518 475 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 C10orf62Q5T681 223 aaPredicted RBP14.67□□□□□ -0.06
UPF1-204ENST00000596842 TNFAIP8L2Q6P589 184 aaPredicted RBP14.67□□□□□ -0.06
UPF1-204ENST00000596842 AGTRAPQ6RW13 159 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 GPR65Q8IYL9 337 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 AQP11Q8NBQ7 271 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 HUS1BQ8NHY5 278 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 OTUB1Q96FW1 271 aaPredicted RBP14.67□□□□□ -0.06
UPF1-204ENST00000596842 FAM129BQ96TA1 746 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 CDADC1Q9BWV3 514 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 TTLL2Q9BWV7 592 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 SORBS1Q9BX66 1292 aaKnown RBP14.67□□□□□ -0.06
UPF1-204ENST00000596842 RUVBL1Q9Y265 456 aaKnown RBP14.67□□□□□ -0.06
UPF1-204ENST00000596842 NUMA1Q14980 2115 aa14.67□□□□□ -0.06
UPF1-204ENST00000596842 JUPP14923 745 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 GPX2P18283 190 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 DEFA1P59665 94 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 DEFA3P59666 94 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 PFN3P60673 137 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 CXCR4P61073 352 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 C2orf80Q0P641 193 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 IRF5Q13568 498 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 SCARB2Q14108 478 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 DNAJC22Q8N4W6 341 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 ST13P5Q8NFI4 369 aaPredicted RBP14.66□□□□□ -0.06
UPF1-204ENST00000596842 KBTBD8Q8NFY9 601 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 BTBD2Q9BX70 525 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 ZNF334Q9HCZ1 680 aaPredicted RBP14.66□□□□□ -0.06
UPF1-204ENST00000596842 TIGARQ9NQ88 270 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 DNMT3AQ9Y6K1 912 aaPredicted RBP14.66□□□□□ -0.06
UPF1-204ENST00000596842 KNL1Q8NG31 2342 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 GBF1Q92538 1859 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 TRPM7Q96QT4 1865 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 AP3D1O14617 1153 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 DSCR3O14972 297 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 RECQLP46063 649 aaPredicted RBP14.66□□□□□ -0.06
UPF1-204ENST00000596842 LYPLAL1Q5VWZ2 237 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 FAM124AQ86V42 546 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 MMP21Q8N119 569 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 CELF5Q8N6W0 485 aaKnown RBP14.66□□□□□ -0.06
UPF1-204ENST00000596842 ZNF461Q8TAF7 563 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 CCDC120Q96HB5 630 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 HRASLS5Q96KN8 279 aa14.66□□□□□ -0.06
UPF1-204ENST00000596842 RDH14Q9HBH5 336 aa14.66□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms