RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 SIRT5Q9NXA8 310 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 TAGLN3Q9UI15 199 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 HCN4Q9Y3Q4 1203 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 NR5A2O00482 541 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 SEMA3DO95025 777 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 CAPN3P20807 821 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 SLC14A1Q13336 389 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 VPS26BQ4G0F5 336 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 ANKRD26P1Q6NSI1 321 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 OR2L5Q8NG80 312 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 C16orf78Q8WTQ4 265 aa23.88■■□□□ 1.41
SHMT1-207ENST00000580002 FBP2O00757 339 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 PRPS2P11908 318 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 ACP1P24666 158 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 GSTM2P28161 218 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 MRPL19P49406 292 aaKnown RBP23.87■■□□□ 1.41
SHMT1-207ENST00000580002 CLDN6P56747 220 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 BTN3A2P78410 334 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 PRAMEF17Q5VTA0 474 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 RINLQ6ZS11 566 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 PRSS42Q7Z5A4 293 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 B3GNT8Q7Z7M8 397 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 CAMKVQ8NCB2 501 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 KLHL6Q8WZ60 621 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 SLC41A2Q96JW4 573 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 ZIM2Q9NZV7 527 aa23.87■■□□□ 1.41
SHMT1-207ENST00000580002 NTN3O00634 580 aaPredicted RBP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 MYO1DO94832 1006 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 SLC35G6P0C7Q6 338 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 SMIM10L1P0DMW3 83 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 ESRRAP11474 423 aaPredicted RBP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 CERS1P27544 350 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 CLDN8P56748 225 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 HSD11B2P80365 405 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 RGS1Q08116 209 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 PRSS53Q2L4Q9 553 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 INAVAQ3KP66 663 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 TMEM35AQ53FP2 167 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 ZC3H12BQ5HYM0 836 aaKnown RBP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 CCNYL2Q5T2Q4 361 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 BLOC1S3Q6QNY0 202 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 RIMKLAQ8IXN7 391 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 ARHGEF39Q8N4T4 335 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 PUM2Q8TB72 1066 aaKnown RBP eCLIP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 SLC7A6OSQ96CW6 309 aaPredicted RBP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 SMIM10Q96HG1 83 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 CCDC74BQ96LY2 380 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 NPAS2Q99743 824 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 DPY30Q9C005 99 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 ASPDHA6ND91 283 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 WASHC1A8K0Z3 465 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 ATP5A1P25705 553 aaKnown RBP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 MAPK1P28482 360 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 ADSLP30566 484 aaPredicted RBP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 SSR2P43308 183 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 ACADVLP49748 655 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 POLR2JP52435 117 aaKnown RBP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 TAS2R50P59544 299 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 PHC1P78364 1004 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 CYLC2Q14093 348 aaPredicted RBP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 ARHGAP22Q7Z5H3 698 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 D2HGDHQ8N465 521 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 OR4D9Q8NGE8 314 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 METTL2AQ96IZ6 378 aaKnown RBP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 GFM1Q96RP9 751 aaKnown RBP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 DDX31Q9H8H2 851 aaKnown RBP23.86■■□□□ 1.41
SHMT1-207ENST00000580002 AHSPQ9NZD4 102 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 PDP2Q9P2J9 529 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 MCM8Q9UJA3 840 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 PLCL2Q9UPR0 1127 aa23.86■■□□□ 1.41
SHMT1-207ENST00000580002 RIF1Q5UIP0 2472 aaKnown RBP23.85■■□□□ 1.41
SHMT1-207ENST00000580002 A0A0A6YYD5 115 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 SLC22A2O15244 555 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 THRAP10827 490 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 NELFEP18615 380 aaKnown RBP23.85■■□□□ 1.41
SHMT1-207ENST00000580002 NCALDP61601 193 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 STXBP1P61764 594 aaKnown RBP23.85■■□□□ 1.41
SHMT1-207ENST00000580002 PRTGQ2VWP7 1150 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 DEFB134Q4QY38 66 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 LACTB2Q53H82 288 aaPredicted RBP23.85■■□□□ 1.41
SHMT1-207ENST00000580002 TMEM214Q6NUQ4 689 aaKnown RBP23.85■■□□□ 1.41
SHMT1-207ENST00000580002 RETREG3Q86VR2 466 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 PDSS2Q86YH6 399 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 ACOT4Q8N9L9 421 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 OR7A2PQ8NGA2 310 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 TM4SF18Q96CE8 201 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 RCN3Q96D15 328 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 QRFPRQ96P65 431 aa23.85■■□□□ 1.41
SHMT1-207ENST00000580002 ZNF768Q9H5H4 540 aaKnown RBP23.85■■□□□ 1.41
SHMT1-207ENST00000580002 ZNF860A6NHJ4 632 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 UNC5CO95185 931 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 SNRPB2P08579 225 aaKnown RBP23.84■■□□□ 1.41
SHMT1-207ENST00000580002 IL3P08700 152 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 ACPPP15309 386 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 IL1RNP18510 177 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 JAK1P23458 1154 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 ARL4DP49703 201 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 UGT8Q16880 541 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 SPANXN4Q5MJ08 99 aa23.84■■□□□ 1.41
SHMT1-207ENST00000580002 TRIM40Q6P9F5 258 aa23.84■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms