RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 PDK3Q15120 406 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 LACTB2Q53H82 288 aaPredicted RBP4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 TREML2Q5T2D2 321 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 TSTD2Q5T7W7 516 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 FAM102AQ5T9C2 384 aaPredicted RBP4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 TCERG1LQ5VWI1 586 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 LONP2Q86WA8 852 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 STHQ8IWL8 128 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 KYQ8NBH2 561 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 C7orf57Q8NEG2 295 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 CMASQ8NFW8 434 aaPredicted RBP4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 OR4N2Q8NGD1 307 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 OR56A1Q8NGH5 318 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 OR2AJ1Q8NGZ0 328 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 ERMNQ8TAM6 284 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 SENP8Q96LD8 212 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 HARBI1Q96MB7 349 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 C12orf66Q96MD2 445 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 PANX1Q96RD7 426 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 ZNF347Q96SE7 839 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 SEPHS2Q99611 448 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 FAM110AQ9BQ89 295 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 PCGF1Q9BSM1 259 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 NTMT1Q9BV86 223 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 NUP58Q9BVL2 599 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 SLC39A8Q9C0K1 460 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 C12orf65Q9H3J6 166 aaKnown RBP4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 KCNK13Q9HB14 408 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 RAVER2Q9HCJ3 691 aaKnown RBP4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 DONSONQ9NYP3 566 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 OR6C2Q9NZP2 312 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 THEGQ9P2T0 379 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 ONECUT1Q9UBC0 465 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 SERGEFQ9UGK8 458 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 CRLS1Q9UJA2 301 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 PRDM4Q9UKN5 801 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 FZD10Q9ULW2 581 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 PLCL2Q9UPR0 1127 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 MROH7Q68CQ1 1323 aa4.94□□□□□ -1.62
VPS35P1-201ENST00000563400 TRAV6A0A075B6T7 132 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 TYW5A2RUC4 315 aaKnown RBP4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 SUPT3HB4E1H0 165 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 ANKRD66B4E2M5 251 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 K7ERQ8 282 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 FOXE1O00358 373 aaPredicted RBP4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 YKT6O15498 198 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 PSMD3O43242 534 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 XRCC3O43542 346 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 GMNNO75496 209 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 OR4F21O95013 312 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 GPANK1O95872 356 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 HLA-DQA2P01906 255 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 CA3P07451 260 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 TROVE2P10155 538 aaKnown RBP eCLIP4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 TNNI3P19429 210 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 PCMT1P22061 227 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 PIK3R1P27986 724 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 OR3A1P47881 315 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 FMO5P49326 533 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 SLC26A2P50443 739 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 CRYBB1P53674 252 aaPredicted RBP4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 WDR5P61964 334 aaKnown RBP4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 PSG6Q00889 435 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 OCA2Q04671 838 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 XRCC4Q13426 336 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 COTL1Q14019 142 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 IL18Q14116 193 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 GRB14Q14449 540 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 PRKD1Q15139 912 aaPredicted RBP4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 ZRSR1Q15695 479 aaKnown RBP4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 FAM174BQ3ZCQ3 159 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 HIKESHIQ53FT3 197 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 PDLIM3Q53GG5 364 aaPredicted RBP4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 DCAF6Q58WW2 860 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 TMEM268Q5VZI3 342 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 ALS2CLQ60I27 953 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 LRRC66Q68CR7 880 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 KDM7AQ6ZMT4 941 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 ZNF704Q6ZNC4 412 aaPredicted RBP4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 DBX2Q6ZNG2 339 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 CYB5R4Q7L1T6 521 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 CCDC190Q86UF4 302 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 DTX2Q86UW9 622 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 SERINC5Q86VE9 423 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 KLBQ86Z14 1044 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 SLC7A5P1Q8MH63 180 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 UBE2J2Q8N2K1 259 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 TTC9BQ8N6N2 239 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 ZNF611Q8N823 705 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 HM13Q8TCT9 377 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 RHBDF1Q96CC6 855 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 ERLEC1Q96DZ1 483 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 OR1F2PQ96R84 312 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 SNX18Q96RF0 628 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 C16orf70Q9BSU1 422 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 SGPP1Q9BX95 441 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 MRPL13Q9BYD1 178 aaKnown RBP4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 UPF3BQ9BZI7 483 aaKnown RBP4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 NMNAT2Q9BZQ4 307 aa4.93□□□□□ -1.62
VPS35P1-201ENST00000563400 RHBGQ9H310 441 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms