RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 BDH2Q9BUT1 245 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 ULBP3Q9BZM4 244 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 PTPRFP10586 1907 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 FAM227AF5H4B4 570 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 KPNA4O00629 521 aaPredicted RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 WFS1O76024 890 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 UNC5CO95185 931 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 CPNE6O95741 557 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 SAGP10523 405 aaPredicted RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 RPS15AP62244 130 aaKnown RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 MED21Q13503 144 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 KCNAB1Q14722 419 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 SGCBQ16585 318 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 LIPJQ5W064 366 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 PLEKHM3Q6ZWE6 761 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 ZNF765Q7L2R6 523 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 MCEMP1Q8IX19 187 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 EID3Q8N140 333 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 SLC29A3Q9BZD2 475 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 FOCADQ5VW36 1801 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 CCDC189A1A4V9 331 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 KRBA1A5PL33 1030 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 E7ENX8 843 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 CHRM5P08912 532 aaPredicted RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 AHCYP23526 432 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 DRD3P35462 400 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 CASRP41180 1078 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 XCR1P46094 333 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 RAD23AP54725 363 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 FOXA1P55317 472 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 RPS26P62854 115 aaKnown RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 IL5RAQ01344 420 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 TAP2Q03519 686 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 ZP2Q05996 745 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 PRDX1Q06830 199 aaKnown RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 KCNC3Q14003 757 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 SF3A2Q15428 464 aaKnown RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 BTBD16Q32M84 506 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 TRMT5Q32P41 509 aaKnown RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 GCNT6Q5T4J0 391 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 ADAMTSL4Q6UY14 1074 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 ZNF551Q7Z340 670 aaPredicted RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 NLGN4XQ8N0W4 816 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 SMYD1Q8NB12 490 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 MAGEE2Q8TD90 523 aaPredicted RBP8.86□□□□□ -0.99
VPS39-205ENST00000562258 CNBD2Q96M20 576 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 EHD1Q9H4M9 534 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 IGSF5Q9NSI5 407 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 TMEM184CQ9NVA4 438 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 ENTPD2Q9Y5L3 495 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 DNAJC15Q9Y5T4 150 aa8.86□□□□□ -0.99
VPS39-205ENST00000562258 ELOVL7A1L3X0 281 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 NRG2O14511 850 aaPredicted RBP8.85□□□□□ -0.99
VPS39-205ENST00000562258 KIF1CO43896 1103 aaKnown RBP8.85□□□□□ -0.99
VPS39-205ENST00000562258 PCDHGA12O60330 932 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 LDB3O75112 727 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 PPIBP23284 216 aaKnown RBP8.85□□□□□ -0.99
VPS39-205ENST00000562258 CERS1P27544 350 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 XIAPP98170 497 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 MAT1AQ00266 395 aaKnown RBP8.85□□□□□ -0.99
VPS39-205ENST00000562258 SPIBQ01892 262 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 BNC1Q01954 994 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 DLG1Q12959 904 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 PYCR3Q53H96 274 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 DDX51Q8N8A6 666 aaKnown RBP eCLIP8.85□□□□□ -0.99
VPS39-205ENST00000562258 ZNF248Q8NDW4 579 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 PHOSPHO1Q8TCT1 267 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 TMEM125Q96AQ2 219 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 TMEM74Q96NL1 305 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 CHRDQ9H2X0 955 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 METTL7AQ9H8H3 244 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 KRCC1Q9NPI7 259 aaPredicted RBP8.85□□□□□ -0.99
VPS39-205ENST00000562258 POT1Q9NUX5 634 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 C19orf25Q9UFG5 118 aaPredicted RBP8.85□□□□□ -0.99
VPS39-205ENST00000562258 STOML2Q9UJZ1 356 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 A0A0J9YY10 115 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 FAM149AA5PLN7 773 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 PLRG1O43660 514 aaKnown RBP8.85□□□□□ -0.99
VPS39-205ENST00000562258 ADAM23O75077 832 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 F10P00742 488 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 FAM58BPP0C7Q3 252 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 BCKDHAP12694 445 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 POU2F1P14859 743 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 ATP6V1B1P15313 513 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 ENGP17813 658 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 AVPR2P30518 371 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 SLC7A1P30825 629 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 HK2P52789 917 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 EMP2P54851 167 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 FOXC1Q12948 553 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 KIR2DS3Q14952 304 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 RFTN2Q52LD8 501 aaPredicted RBP8.85□□□□□ -0.99
VPS39-205ENST00000562258 TCTE1Q5JU00 501 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 CEACAM20Q6UY09 585 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 PLPP6Q8IY26 295 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 ZNF786Q8N393 782 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 OR9Q1Q8NGQ5 310 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 CCDC74AQ96AQ1 378 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 NRBF2Q96F24 287 aa8.85□□□□□ -0.99
VPS39-205ENST00000562258 RMND5BQ96G75 393 aaPredicted RBP8.85□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms