RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 NIPAL1Q6NVV3 410 aa20.56■□□□□ 0.88
SNX1-206ENST00000559389 TRIM40Q6P9F5 258 aa20.56■□□□□ 0.88
SNX1-206ENST00000559389 ATG14Q6ZNE5 492 aa20.56■□□□□ 0.88
SNX1-206ENST00000559389 SPACA3Q8IXA5 215 aa20.56■□□□□ 0.88
SNX1-206ENST00000559389 SELENOMQ8WWX9 145 aa20.56■□□□□ 0.88
SNX1-206ENST00000559389 KIAA1143Q96AT1 154 aaPredicted RBP20.56■□□□□ 0.88
SNX1-206ENST00000559389 MMABQ96EY8 250 aaPredicted RBP20.56■□□□□ 0.88
SNX1-206ENST00000559389 DCBLD2Q96PD2 775 aa20.56■□□□□ 0.88
SNX1-206ENST00000559389 F2RL3Q96RI0 385 aa20.56■□□□□ 0.88
SNX1-206ENST00000559389 OR51B5Q9H339 312 aa20.56■□□□□ 0.88
SNX1-206ENST00000559389 PRM3Q9NNZ6 103 aa20.56■□□□□ 0.88
SNX1-206ENST00000559389 IFT80Q9P2H3 777 aaPredicted RBP20.56■□□□□ 0.88
SNX1-206ENST00000559389 SSUH2Q9Y2M2 353 aa20.56■□□□□ 0.88
SNX1-206ENST00000559389 TIMM22Q9Y584 194 aa20.56■□□□□ 0.88
SNX1-206ENST00000559389 RRP8O43159 456 aaKnown RBP20.55■□□□□ 0.88
SNX1-206ENST00000559389 CRCPO75575 148 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 B3GALT4O96024 378 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 PDYNP01213 254 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 RAB40ALP0C0E4 278 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 NEFHP12036 1026 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 LIFP15018 202 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 TCN2P20062 427 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 GRK2P25098 689 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 SKP1P63208 163 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 ZNF33BQ06732 778 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 SRSF6Q13247 344 aaKnown RBP20.55■□□□□ 0.88
SNX1-206ENST00000559389 CUL3Q13618 768 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 SGO1Q5FBB7 561 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 DEPDC1Q5TB30 811 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 MRPL14Q6P1L8 145 aaKnown RBP20.55■□□□□ 0.88
SNX1-206ENST00000559389 ABHD17CQ6PCB6 329 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 CHSY3Q70JA7 882 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 UBE3DQ7Z6J8 389 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 COL26A1Q96A83 441 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 MTFMTQ96DP5 389 aaKnown RBP20.55■□□□□ 0.88
SNX1-206ENST00000559389 QRFPRQ96P65 431 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 FAM117AQ9C073 453 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 GPN2Q9H9Y4 310 aaPredicted RBP20.55■□□□□ 0.88
SNX1-206ENST00000559389 BRF2Q9HAW0 419 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 EML4Q9HC35 981 aaKnown RBP20.55■□□□□ 0.88
SNX1-206ENST00000559389 MED4Q9NPJ6 270 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 CTSFQ9UBX1 484 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 PCDHGA6Q9Y5G7 932 aa20.55■□□□□ 0.88
SNX1-206ENST00000559389 A0A087WV48 116 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 ZNF860A6NHJ4 632 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 SGK494L7N484 410 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 SH3BGRLO75368 114 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 RDH16O75452 317 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 SEMA3DO95025 777 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 ATXN8OSP0DMR3 200 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 UROSP10746 265 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 HSD3B1P14060 373 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 NR1D1P20393 614 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 F8A1P23610 371 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 PTX3P26022 381 aaPredicted RBP20.54■□□□□ 0.88
SNX1-206ENST00000559389 HSD3B2P26439 372 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 PLA2G16P53816 162 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 ABCE1P61221 599 aaKnown RBP20.54■□□□□ 0.88
SNX1-206ENST00000559389 TGM3Q08188 693 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 CSTF3Q12996 717 aaKnown RBP20.54■□□□□ 0.88
SNX1-206ENST00000559389 KANK2Q63ZY3 851 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 CLEC6AQ6EIG7 209 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 OVCH1Q7RTY7 1134 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 SRFBP1Q8NEF9 429 aaKnown RBP20.54■□□□□ 0.88
SNX1-206ENST00000559389 RAB3IL1Q8TBN0 382 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 KCNC2Q96PR1 638 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 HBEGFQ99075 208 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 SERPINI1Q99574 410 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 SLC26A1Q9H2B4 701 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 MAP4K5Q9Y4K4 846 aa20.54■□□□□ 0.88
SNX1-206ENST00000559389 AHCTF1Q8WYP5 2266 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 IGLV3-12A0A075B6K2 115 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 A0A088AWK7 358 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 A0A0G2JN53 185 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 SAP18O00422 153 aaKnown RBP20.53■□□□□ 0.88
SNX1-206ENST00000559389 PLPP1O14494 284 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 AZIN1O14977 448 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 ITM2AO43736 263 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 CNOT3O75175 753 aaKnown RBP20.53■□□□□ 0.88
SNX1-206ENST00000559389 ULK1O75385 1050 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 LYPLA1O75608 230 aaPredicted RBP20.53■□□□□ 0.88
SNX1-206ENST00000559389 SCELO95171 688 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 HSPA4LO95757 839 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 ALBP02768 609 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 ZNF10P21506 573 aaPredicted RBP20.53■□□□□ 0.88
SNX1-206ENST00000559389 RAP1GDS1P52306 607 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 ARFIP1P53367 373 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 MAT1AQ00266 395 aaKnown RBP20.53■□□□□ 0.88
SNX1-206ENST00000559389 BST1Q10588 318 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 HSP90B2PQ58FF3 399 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 ENDOVQ8N8Q3 282 aaKnown RBP20.53■□□□□ 0.88
SNX1-206ENST00000559389 CENPKQ9BS16 269 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 TBCDQ9BTW9 1192 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 EFHD1Q9BUP0 239 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 GPR87Q9BY21 358 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 WDR70Q9NW82 654 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 HCN3Q9P1Z3 774 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 IL17BQ9UHF5 180 aa20.53■□□□□ 0.88
SNX1-206ENST00000559389 GPN3Q9UHW5 284 aaPredicted RBP20.53■□□□□ 0.88
SNX1-206ENST00000559389 APC2O95996 2303 aa20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms