RNA–Protein interactions for RNA: ENST00000558040.5

SNX1-203, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 774 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-203ENST00000558040 CCDC121Q6ZUS5 278 aa16.05■□□□□ 0.16
SNX1-203ENST00000558040 SLITRK4Q8IW52 837 aa16.05■□□□□ 0.16
SNX1-203ENST00000558040 TTC29Q8NA56 475 aaPredicted RBP16.05■□□□□ 0.16
SNX1-203ENST00000558040 KCT2Q8NC54 265 aa16.05■□□□□ 0.16
SNX1-203ENST00000558040 UTP15Q8TED0 518 aaKnown RBP16.05■□□□□ 0.16
SNX1-203ENST00000558040 STARD8Q92502 1023 aa16.05■□□□□ 0.16
SNX1-203ENST00000558040 CMTM5Q96DZ9 223 aa16.05■□□□□ 0.16
SNX1-203ENST00000558040 TMEM74Q96NL1 305 aa16.05■□□□□ 0.16
SNX1-203ENST00000558040 TUBB6Q9BUF5 446 aa16.05■□□□□ 0.16
SNX1-203ENST00000558040 DPY30Q9C005 99 aa16.05■□□□□ 0.16
SNX1-203ENST00000558040 DDX31Q9H8H2 851 aaKnown RBP16.05■□□□□ 0.16
SNX1-203ENST00000558040 PCDHGA1Q9Y5H4 931 aa16.05■□□□□ 0.16
SNX1-203ENST00000558040 SLC22A7Q9Y694 548 aa16.05■□□□□ 0.16
SNX1-203ENST00000558040 MDC1Q14676 2089 aaKnown RBP16.05■□□□□ 0.16
SNX1-203ENST00000558040 LOC105378220A0A1B0GUY1 285 aaPredicted RBP16.04■□□□□ 0.16
SNX1-203ENST00000558040 CAPN14A8MX76 684 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 TMEM150CB9EJG8 249 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 RTCAO00442 366 aaKnown RBP16.04■□□□□ 0.16
SNX1-203ENST00000558040 HCRTR1O43613 425 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 PRMT3O60678 531 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 CDK4P11802 303 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 PRPS1L1P21108 318 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 HIST1H1TP22492 207 aaPredicted RBP16.04■□□□□ 0.16
SNX1-203ENST00000558040 JAK1P23458 1154 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 MAPK12P53778 367 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 CLNS1AP54105 237 aaKnown RBP16.04■□□□□ 0.16
SNX1-203ENST00000558040 EMP3P54852 163 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 NME5P56597 212 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 CLDN8P56748 225 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 RAB8AP61006 207 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 TRA2BP62995 288 aaKnown RBP16.04■□□□□ 0.16
SNX1-203ENST00000558040 SKP1P63208 163 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 GRM7Q14831 915 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 PTGR1Q14914 329 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 HERC3Q15034 1050 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 PRTGQ2VWP7 1150 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 AGKQ53H12 422 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 GARNL3Q5VVW2 1013 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 NIPAL1Q6NVV3 410 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 PAOXQ6QHF9 649 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 UBE3DQ7Z6J8 389 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 GPR135Q8IZ08 494 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 ZCCHC7Q8N3Z6 543 aaKnown RBP16.04■□□□□ 0.16
SNX1-203ENST00000558040 GLB1L3Q8NCI6 653 aaPredicted RBP16.04■□□□□ 0.16
SNX1-203ENST00000558040 ZCCHC10Q8TBK6 192 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 TSSK3Q96PN8 268 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 ZNF717Q9BY31 904 aaPredicted RBP16.04■□□□□ 0.16
SNX1-203ENST00000558040 AICDAQ9GZX7 198 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 CCDC167Q9P0B6 97 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 SERTAD3Q9UJW9 196 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 WBP11Q9Y2W2 641 aaKnown RBP16.04■□□□□ 0.16
SNX1-203ENST00000558040 ASXL3Q9C0F0 2248 aa16.04■□□□□ 0.16
SNX1-203ENST00000558040 OTOGLQ3ZCN5 2332 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 A0A0A6YYD5 115 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 GUCY1B2O75343 617 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 EEDO75530 441 aaKnown RBP16.03■□□□□ 0.16
SNX1-203ENST00000558040 OR2B3O76000 313 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 KIAA0754O94854 1291 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 UBOX5O94941 541 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 SCELO95171 688 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 GBAP04062 536 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 SMIM10L1P0DMW3 83 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 FOLR1P15328 257 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 ALOX12P18054 663 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 ATP5A1P25705 553 aaKnown RBP16.03■□□□□ 0.16
SNX1-203ENST00000558040 TPP2P29144 1249 aaPredicted RBP16.03■□□□□ 0.16
SNX1-203ENST00000558040 CSTF2P33240 577 aaKnown RBP eCLIP16.03■□□□□ 0.163e-6■■□□□ 12.2
SNX1-203ENST00000558040 HPCAL1P37235 193 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 MTTPP55157 894 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 ITGA1P56199 1179 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 UFM1P61960 85 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 BTN3A2P78410 334 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 NHLH1Q02575 133 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 ZFP36L1Q07352 338 aaKnown RBP16.03■□□□□ 0.16
SNX1-203ENST00000558040 SLC9A5Q14940 896 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 TRIP6Q15654 476 aaKnown RBP16.03■□□□□ 0.16
SNX1-203ENST00000558040 GPR19Q15760 415 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 CCDC157Q569K6 752 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 TLDC1Q6P9B6 456 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 FOXR1Q6PIV2 292 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 IKBIPQ70UQ0 350 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 ASCL5Q7RTU5 278 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 GLRX5Q86SX6 157 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 TREML1Q86YW5 311 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 TMEM132CQ8N3T6 1108 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 CLHC1Q8NHS4 586 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 CDC26Q8NHZ8 85 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 RP9Q8TA86 221 aaKnown RBP16.03■□□□□ 0.16
SNX1-203ENST00000558040 SMIM10Q96HG1 83 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 TEFMQ96QE5 360 aaKnown RBP16.03■□□□□ 0.16
SNX1-203ENST00000558040 SERINC2Q96SA4 455 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 SORBS1Q9BX66 1292 aaKnown RBP16.03■□□□□ 0.16
SNX1-203ENST00000558040 ANKHQ9HCJ1 492 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 MYNNQ9NPC7 610 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 LHX9Q9NQ69 397 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 PRDM7Q9NQW5 492 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 ENAMQ9NRM1 1142 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 FGF21Q9NSA1 209 aa16.03■□□□□ 0.16
SNX1-203ENST00000558040 LYARQ9NX58 379 aaKnown RBP16.03■□□□□ 0.16
SNX1-203ENST00000558040 AKAP7Q9P0M2 348 aaPredicted RBP16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms