RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 HEPHQ9BQS7 1158 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 ABCG4Q9H172 646 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 ZDHHC4Q9NPG8 344 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 SPASTQ9UBP0 616 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 PSORS1C1Q9UIG5 152 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 PCYT1BQ9Y5K3 369 aaPredicted RBP12.36□□□□□ -0.43
LDLR-207ENST00000558013 HSPE1-MOB4S4R3N1 261 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 TLL1O43897 1013 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 PRMT3O60678 531 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 FGF18O76093 207 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 HNF4AP41235 474 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 EIF2B2P49770 351 aaKnown RBP12.36□□□□□ -0.43
LDLR-207ENST00000558013 TAS2R50P59544 299 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 TIGD6Q17RP2 521 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 SLC44A2Q8IWA5 706 aaPredicted RBP12.36□□□□□ -0.43
LDLR-207ENST00000558013 LGI4Q8N135 537 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 CLIP4Q8N3C7 705 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 KREMEN2Q8NCW0 462 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 VPS37AQ8NEZ2 397 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 VN1R2Q8NFZ6 395 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 OR56A3Q8NH54 315 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 HTRA1Q92743 480 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 MRGPRX3Q96LB0 322 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 EPYCQ99645 322 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 EMILIN2Q9BXX0 1053 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 WDR12Q9GZL7 423 aaKnown RBP12.36□□□□□ -0.43
LDLR-207ENST00000558013 RC3H2Q9HBD1 1191 aaKnown RBP12.36□□□□□ -0.43
LDLR-207ENST00000558013 FBXO8Q9NRD0 319 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 C5AR2Q9P296 337 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 OSGIN1Q9UJX0 560 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 TRIM17Q9Y577 477 aa12.36□□□□□ -0.43
LDLR-207ENST00000558013 SERTM1A2A2V5 107 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 HIDE1A8MVS5 230 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 UGDHO60701 494 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 TNFRSF21O75509 655 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 CATP04040 527 aaKnown RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 IGFBP1P08833 259 aaPredicted RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 SYN1P17600 705 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 C2orf80Q0P641 193 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 SCARB2Q14108 478 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 DUSP7Q16829 419 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 LEXMQ3ZCV2 418 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 UTS2BQ765I0 119 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 DNAJC22Q8N4W6 341 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 ZNF296Q8WUU4 475 aaPredicted RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 CENPOQ9BU64 300 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 ITPAQ9BY32 194 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 OR2AG1Q9H205 316 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 ASAH2Q9NR71 780 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 BTNL2Q9UIR0 455 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 RAB23Q9ULC3 237 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 ATP11BQ9Y2G3 1177 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 PADI2Q9Y2J8 665 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 PCDHGA2Q9Y5H1 932 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 KCNE2Q9Y6J6 123 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 A8MU76 341 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 E9PQ18 207 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 H3BM21 787 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 RTCAO00442 366 aaKnown RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 ATG13O75143 517 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 CXCL14O95715 111 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 XPAP23025 273 aaPredicted RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 GTF2E2P29084 291 aaKnown RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 PCGF2P35227 344 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 GGT2P36268 569 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 PRIM2P49643 509 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 RPS3AP61247 264 aaKnown RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 RPS26P11Q5JNZ5 115 aaPredicted RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 BRAT1Q6PJG6 821 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 TECPR1Q7Z6L1 1165 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 SVOPQ8N4V2 548 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 FAM83FQ8NEG4 500 aaPredicted RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 RHOXF1Q8NHV9 184 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 HPS1Q92902 700 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 GABARAPL3Q9BY60 117 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 SNX8Q9Y5X2 465 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 KPNA3O00505 521 aaPredicted RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 KPNA5O15131 536 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 TBX1O43435 398 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 C1orf105O95561 183 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 ELFN1P0C7U0 828 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 CSF2RAP15509 400 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 POU1F1P28069 291 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 SOAT1P35610 550 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 FEN1P39748 380 aaKnown RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 ST3GAL4Q11206 333 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 ZNF284Q2VY69 593 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 ZNF697Q5TEC3 545 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 UBE2UQ5VVX9 321 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 MED27Q6P2C8 311 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 LIPIQ6XZB0 460 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 WDR53Q7Z5U6 358 aaPredicted RBP12.35□□□□□ -0.43
LDLR-207ENST00000558013 TRAPPC5Q8IUR0 188 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 CPA6Q8N4T0 437 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 TRAM1L1Q8N609 369 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 SLAIN1Q8ND83 568 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.35□□□□□ -0.432e-36■■■■■ 39.1
LDLR-207ENST00000558013 SLC38A4Q969I6 547 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 Q96MT0 163 aa12.35□□□□□ -0.43
LDLR-207ENST00000558013 CCM2Q9BSQ5 444 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms