RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	SPIN4	Q56A73	249 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	COQ5	Q5HYK3	327 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	KIAA0319	Q5VV43	1072 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	OLFML2A	Q68BL7	652 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	FCRLB	Q6BAA4	426 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	NADSYN1	Q6IA69	706 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ARMC6	Q6NXE6	501 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ANKRD54	Q6NXT1	300 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	HSDL2	Q6YN16	418 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	BTLA	Q7Z6A9	289 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	GLCCI1	Q86VQ1	547 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	COLGALT2	Q8IYK4	626 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	CLDN19	Q8N6F1	224 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	FAM86B1	Q8N7N1	296 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	PJA1	Q8NG27	643 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR10T2	Q8NGX3	314 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	GNPDA2	Q8TDQ7	276 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	RFT1	Q96AA3	541 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	KCNN2	Q9H2S1	579 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	GKN1	Q9NS71	199 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	RABL2A	Q9UBK7	228 aa	Predicted RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SPACA6	W5XKT8	324 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	COL16A1	Q07092	1604 aa	Predicted RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ATAD5	Q96QE3	1844 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005		A0A1B0GVT2	93 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZBTB42	B2RXF5	422 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	CDK1	P06493	297 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	C8orf89	P0DMQ9	161 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SAG	P10523	405 aa	Predicted RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	HNF1B	P35680	557 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	DCT	P40126	519 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	HNMT	P50135	292 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	CAV3	P56539	151 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	TAS2R50	P59544	299 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	PSMA6	P60900	246 aa	Known RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	TSPAN5	P62079	268 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	RHAG	Q02094	409 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	PCDH1	Q08174	1060 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	CD300C	Q08708	224 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SCRN3	Q0VDG4	424 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	PTPRR	Q15256	657 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	USP41	Q3LFD5	358 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	BCL2L15	Q5TBC7	163 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	KDELC1	Q6UW63	502 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	TIGD4	Q8IY51	512 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	GOLM1	Q8NBJ4	401 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	FANK1	Q8TC84	345 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZDHHC1	Q8WTX9	485 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	AP2M1	Q96CW1	435 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	GAL3ST1	Q99999	423 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	RRAGC	Q9HB90	399 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	DCAF13	Q9NV06	445 aa	Known RBP	4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	SPO11	Q9Y5K1	396 aa		4.81	□□□□□ -1.64
SYNE2-223	ENST00000557005	CLCA1	A8K7I4	914 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR6A2	O95222	327 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	RPN2	P04844	631 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	CSN2	P05814	226 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	CBSL	P0DN79	551 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	CBS	P35520	551 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	PSMD4	P55036	377 aa	Known RBP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	ADARB1	P78563	741 aa	Known RBP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	CDK6	Q00534	326 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	ABHD18	Q0P651	414 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	EIF2B5	Q13144	721 aa	Known RBP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	CRB2	Q5IJ48	1285 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZDHHC20	Q5W0Z9	365 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	NOXRED1	Q6NXP6	359 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	SLC30A6	Q6NXT4	461 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	CEACAM20	Q6UY09	585 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	FRRS1	Q6ZNA5	592 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF627	Q7L945	461 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	SRFBP1	Q8NEF9	429 aa	Known RBP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR8S1	Q8NH09	359 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	RFK	Q969G6	155 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	RIOK2	Q9BVS4	552 aa	Known RBP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	SDR39U1	Q9NRG7	319 aa	Predicted RBP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZDHHC3	Q9NYG2	299 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	GNG8	Q9UK08	70 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	GPR52	Q9Y2T5	361 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	HSPE1-MOB4	S4R3N1	261 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005		A0A1W2PQL4	384 aa	Predicted RBP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	RIIAD1	A6NNX1	92 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005		E7EQ34	232 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005		H3BM21	787 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR7A17	O14581	309 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	GOSR2	O14653	212 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	OR2B3	O76000	313 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	RB1	P06400	928 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	FSHR	P23945	695 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	NSG1	P42857	185 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	PREP	P48147	710 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	ZNF155	Q12901	538 aa	Predicted RBP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	RGMB	Q6NW40	437 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	NCEH1	Q6PIU2	408 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	ARL9	Q6T311	187 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	TMEM207	Q6UWW9	146 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	DPY19L3	Q6ZPD9	716 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	UBE2Q1	Q7Z7E8	422 aa		4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	DCP2	Q8IU60	420 aa	Known RBP	4.8	□□□□□ -1.64
SYNE2-223	ENST00000557005	TMEM151A	Q8N4L1	468 aa		4.8	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms