RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 PHACTR4Q8IZ21 702 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 RNF175Q8N4F7 328 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 TTC29Q8NA56 475 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 TBC1D20Q96BZ9 403 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 SIGLEC11Q96RL6 698 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 DPY30Q9C005 99 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 ACOXLQ9NUZ1 547 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 ARL15Q9NXU5 204 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 SNX6Q9UNH7 406 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 PTPRSQ13332 1948 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 TRBV5-3A0A0A0MS03 114 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 ABHD14A-ACY1A0A1B0GW23 586 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 A8MV72 311 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 M0R082 166 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 AP3D1O14617 1153 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 B3GALNT1O75752 331 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 WDR47O94967 919 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 CLDN9O95484 217 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 LRG1P02750 347 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 PGRP06401 933 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 KRT20P35900 424 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 RPS5P46782 204 aaKnown RBP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 SPINT3P49223 89 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 TARDBPQ13148 414 aaKnown RBP eCLIP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 TTLL9Q3SXZ7 439 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 CARD16Q5EG05 197 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 ZNF648Q5T619 568 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 CPZQ66K79 652 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 USP45Q70EL2 814 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 UBE2R2Q712K3 238 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 SLC46A3Q7Z3Q1 461 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 PHF6Q8IWS0 365 aaKnown RBP eCLIP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 OR8H2Q8N162 312 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 ST13P5Q8NFI4 369 aaPredicted RBP11.79□□□□□ -0.52
SHMT2-207ENST00000553837 SCAMP4Q969E2 229 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 NCLNQ969V3 563 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 ULK4Q96C45 1275 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 PYURFQ96I23 114 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 CITED4Q96RK1 184 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 TBCDQ9BTW9 1192 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 LINC00597Q9H2U6 94 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 TOR4AQ9NXH8 423 aa11.79□□□□□ -0.52
SHMT2-207ENST00000553837 GIMAP1-GIMAP5A0A087WTJ2 511 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 MEIOCA2RUB1 952 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 H3BQ06 376 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-207ENST00000553837 hCG_2039718K7EN88 272 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 PDPK1O15530 556 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 SGTAO43765 313 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 CREG1O75629 220 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 ANXA5P08758 320 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 CTSAP10619 480 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 IL7P13232 177 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 HTR2BP41595 481 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 PIK3CBP42338 1070 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 SLC9A3P48764 834 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 DAPP51397 102 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 GPLD1P80108 840 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 MAPKAPK3Q16644 382 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 RUNDC3AQ59EK9 446 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 TMEM215Q68D42 235 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 KDM4DQ6B0I6 523 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 CHPFQ8IZ52 775 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 ANKRD53Q8N9V6 530 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 ASB11Q8WXH4 323 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 MYDGFQ969H8 173 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 GIMAP5Q96F15 307 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 OR2A14Q96R47 310 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 SDHCQ99643 169 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-207ENST00000553837 P2RY13Q9BPV8 354 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 SLC30A2Q9BRI3 323 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 INPP5KQ9BT40 448 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 COPS4Q9BT78 406 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 KCNN2Q9H2S1 579 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 SLC32A1Q9H598 525 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 SERHLQ9NQF3 203 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP11.78□□□□□ -0.52
SHMT2-207ENST00000553837 C14orf119Q9NWQ9 140 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 C1orf109Q9NX04 203 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 TBC1D24Q9ULP9 559 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 RWDD3Q9Y3V2 267 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 ARPC4-TTLL3A0A0A6YYG9 625 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 LOC100506127A0A0U1RQW1 187 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 LINC00854A0A1B0GVQ3 168 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 NEDD8-MDP1E9PL57 170 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 SERPINA1P01009 418 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 CBSLP0DN79 551 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 CBSP35520 551 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 SLC6A12P48065 614 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 NRIP1P48552 1158 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 PTPN5P54829 565 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 TBCEQ15813 527 aaPredicted RBP11.78□□□□□ -0.52
SHMT2-207ENST00000553837 PTCHD3Q3KNS1 767 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 FBXO43Q4G163 708 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 ARMC4Q5T2S8 1044 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 KIAA1614Q5VZ46 1190 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 FAM205BPQ63HN1 556 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 HSD11B1LQ7Z5J1 315 aa11.78□□□□□ -0.52
SHMT2-207ENST00000553837 PLPP6Q8IY26 295 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms