RNA–Protein interactions for RNA: ENST00000553605.1

PRPF39-204, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-204ENST00000553605 SMTNL1A8MU46 457 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 CLDN4O14493 209 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 CHST10O43529 356 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 HCN1O60741 890 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 METTL18O95568 372 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 CNOT4O95628 575 aaKnown RBP12.8□□□□□ -0.36
PRPF39-204ENST00000553605 SLC16A8O95907 504 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 SERPINC1P01008 464 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 CEACAM8P31997 349 aaPredicted RBP12.8□□□□□ -0.36
PRPF39-204ENST00000553605 TTPAP49638 278 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 PRAMEP78395 509 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 HYAL2Q12891 473 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 ASTE1Q2TB18 679 aaPredicted RBP12.8□□□□□ -0.36
PRPF39-204ENST00000553605 THEMIS2Q5TEJ8 643 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 QSOX2Q6ZRP7 698 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 SLC26A11Q86WA9 606 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 ULK2Q8IYT8 1036 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 B3GNT7Q8NFL0 401 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 ZNF480Q8WV37 535 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 SLC13A3Q8WWT9 602 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 ASB15Q8WXK1 588 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 SMPDL3BQ92485 455 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 PERPQ96FX8 193 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 CAPZA3Q96KX2 299 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 ZNF778Q96MU6 729 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 NAT10Q9H0A0 1025 aaKnown RBP12.8□□□□□ -0.36
PRPF39-204ENST00000553605 FAM114A2Q9NRY5 505 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 SPRR3Q9UBC9 169 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 RIMKLBQ9ULI2 386 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 PCDHGB3Q9Y5G1 929 aa12.8□□□□□ -0.36
PRPF39-204ENST00000553605 TCRBV16S1A1N1A0A5B0 115 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 MBD3L4A6NDZ8 208 aaPredicted RBP12.79□□□□□ -0.36
PRPF39-204ENST00000553605 MBD3L5A6NJ08 208 aaPredicted RBP12.79□□□□□ -0.36
PRPF39-204ENST00000553605 PSMD3O43242 534 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 PSIP1O75475 530 aaKnown RBP12.79□□□□□ -0.36
PRPF39-204ENST00000553605 ENDOUP21128 410 aaKnown RBP12.79□□□□□ -0.36
PRPF39-204ENST00000553605 MAOAP21397 527 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 HRH2P25021 359 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 OLR1P78380 273 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 ACVR1Q04771 509 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 HERC3Q15034 1050 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 HYAL4Q2M3T9 481 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 XKR6Q5GH73 641 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 LINC00523Q86TU6 105 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 ASPGQ86U10 573 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 FBXW8Q8N3Y1 598 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 OR52K1Q8NGK4 314 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 DACH2Q96NX9 599 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 PANX2Q96RD6 677 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 CATSPERZQ9NTU4 200 aa12.79□□□□□ -0.36
PRPF39-204ENST00000553605 TRMT1Q9NXH9 659 aaKnown RBP12.79□□□□□ -0.36
PRPF39-204ENST00000553605 MARCH4Q9P2E8 410 aaPredicted RBP12.79□□□□□ -0.36
PRPF39-204ENST00000553605 ZNF223Q9UK11 482 aaPredicted RBP12.79□□□□□ -0.36
PRPF39-204ENST00000553605 ANK3Q12955 4377 aaKnown RBP12.78□□□□□ -0.36
PRPF39-204ENST00000553605 OR2J2O76002 312 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 ZFAND5O76080 213 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 MYO1DO94832 1006 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 OR6B1O95007 311 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 EPPINO95925 133 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 GAS8O95995 478 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 CATP04040 527 aaKnown RBP12.78□□□□□ -0.36
PRPF39-204ENST00000553605 ATP5DP30049 168 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 MARCKSL1P49006 195 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 FOXO1Q12778 655 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 TRIM14Q14142 442 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 GBX1Q14549 363 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 ZNF750Q32MQ0 723 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 CAPN13Q6MZZ7 669 aaPredicted RBP12.78□□□□□ -0.36
PRPF39-204ENST00000553605 FAM47EQ6ZV65 393 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 LRRC6Q86X45 466 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 LRRC56Q8IYG6 542 aaPredicted RBP12.78□□□□□ -0.36
PRPF39-204ENST00000553605 FBXO15Q8NCQ5 510 aaPredicted RBP12.78□□□□□ -0.36
PRPF39-204ENST00000553605 IQCDQ96DY2 449 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 VMP1Q96GC9 406 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 CCDC77Q9BR77 488 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 FAM129AQ9BZQ8 928 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 EPB41L4BQ9H329 900 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 LIN28AQ9H9Z2 209 aaKnown RBP12.78□□□□□ -0.36
PRPF39-204ENST00000553605 NECTIN3Q9NQS3 549 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 PRDM9Q9NQV7 894 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 EIF3LQ9Y262 564 aaKnown RBP12.78□□□□□ -0.36
PRPF39-204ENST00000553605 VPS9D1Q9Y2B5 631 aa12.78□□□□□ -0.36
PRPF39-204ENST00000553605 SONP18583 2426 aaKnown RBP12.78□□□□□ -0.36
PRPF39-204ENST00000553605 IGKV3D-11A0A0A0MRZ8 115 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 HAX1O00165 279 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 CASKO14936 926 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 CD3EAPO15446 510 aaKnown RBP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 WIPF1O43516 503 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 AKR1B10O60218 316 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 PRKNO60260 465 aaPredicted RBP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 LCMT2O60294 686 aaKnown RBP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 GALR3O60755 368 aaPredicted RBP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 NDUFS3O75489 264 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 SYF2O95926 243 aaKnown RBP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 IL2RAP01589 272 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 GYPCP04921 128 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 SLC35G6P0C7Q6 338 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 RPS3P23396 243 aaKnown RBP eCLIP12.77□□□□□ -0.37
PRPF39-204ENST00000553605 ADRA1DP25100 572 aa12.77□□□□□ -0.37
PRPF39-204ENST00000553605 TIMP3P35625 211 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms