RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 GPR50Q13585 617 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 ELOAQ14241 798 aaKnown RBP16.85■□□□□ 0.29
SYNE3-202ENST00000553340 ZFP69Q49AA0 526 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 PLAG1Q6DJT9 500 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 CCSAPQ6IQ19 270 aaPredicted RBP16.85■□□□□ 0.29
SYNE3-202ENST00000553340 PTCHD4Q6ZW05 846 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 NLRP8Q86W28 1048 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 SLC44A2Q8IWA5 706 aaPredicted RBP16.85■□□□□ 0.29
SYNE3-202ENST00000553340 GTPBP3Q969Y2 492 aaKnown RBP16.85■□□□□ 0.29
SYNE3-202ENST00000553340 TAS2R9Q9NYW1 312 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 OGDHLQ9ULD0 1010 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 SLC6A14Q9UN76 642 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 CENPXA8MT69 81 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 CENPBD1B2RD01 187 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 RNASET2O00584 256 aaKnown RBP16.85■□□□□ 0.29
SYNE3-202ENST00000553340 GPX5O75715 221 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 CCNB2O95067 398 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 RPL17P18621 184 aaKnown RBP16.85■□□□□ 0.29
SYNE3-202ENST00000553340 CTGFP29279 349 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 ALDH9A1P49189 494 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 CASP9P55211 416 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 KCNC3Q14003 757 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 SCARB2Q14108 478 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 ARMC4Q5T2S8 1044 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 GCNT6Q5T4J0 391 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 NXNL2Q5VZ03 156 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 TRAF7Q6Q0C0 670 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 ZNF517Q6ZMY9 492 aaPredicted RBP16.85■□□□□ 0.29
SYNE3-202ENST00000553340 THOC6Q86W42 341 aaKnown RBP16.85■□□□□ 0.29
SYNE3-202ENST00000553340 TMEM173Q86WV6 379 aaPredicted RBP16.85■□□□□ 0.29
SYNE3-202ENST00000553340 RNF130Q86XS8 419 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 RAB43Q86YS6 212 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 FAM129BQ96TA1 746 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 BRF2Q9HAW0 419 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 EXOSC4Q9NPD3 245 aaKnown RBP16.85■□□□□ 0.29
SYNE3-202ENST00000553340 PCDHB7Q9Y5E2 793 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 PCDHGB2Q9Y5G2 931 aa16.85■□□□□ 0.29
SYNE3-202ENST00000553340 GNG14A0A1W2PPG7 69 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 E7EQ34 232 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 H0YIV9 168 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 PCDH17O14917 1159 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 SH3BGRLO75368 114 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 LATS1O95835 1130 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 HNF4AP41235 474 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 RBBP4Q09028 425 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 PLD1Q13393 1074 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 SSX1Q16384 188 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 COX20Q5RI15 118 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 CLP1Q92989 425 aaKnown RBP16.84■□□□□ 0.29
SYNE3-202ENST00000553340 SCRN2Q96FV2 425 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 CASD1Q96PB1 797 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 PIP5K1AQ99755 562 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 CNPPD1Q9BV87 410 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 TAPBPLQ9BX59 468 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 ASPNQ9BXN1 380 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 SGK2Q9HBY8 427 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 PRAMEF25A6NGN4 478 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 TNFRSF21O75509 655 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 ETHE1O95571 254 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 ADRA2AP08913 450 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 ATP1B2P14415 290 aaPredicted RBP16.84■□□□□ 0.29
SYNE3-202ENST00000553340 PRIM2P49643 509 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 MVDP53602 400 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 PTSQ03393 145 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 GRHL2Q6ISB3 625 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 SLC8B1Q6J4K2 584 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 RFLNAQ6ZTI6 216 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 USP45Q70EL2 814 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 ASCC1Q8N9N2 400 aaKnown RBP16.84■□□□□ 0.29
SYNE3-202ENST00000553340 NFKBIDQ8NI38 313 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 GEMIN6Q8WXD5 167 aaKnown RBP16.84■□□□□ 0.29
SYNE3-202ENST00000553340 ACER3Q9NUN7 267 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 GPATCH2Q9NW75 528 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 PLXNB3Q9ULL4 1909 aa16.84■□□□□ 0.29
SYNE3-202ENST00000553340 J3KTA2 159 aa16.83■□□□□ 0.29
SYNE3-202ENST00000553340 KPNA5O15131 536 aa16.83■□□□□ 0.29
SYNE3-202ENST00000553340 HOXC11O43248 304 aaPredicted RBP16.83■□□□□ 0.29
SYNE3-202ENST00000553340 DDOSTP39656 456 aa16.83■□□□□ 0.29
SYNE3-202ENST00000553340 PCSK9Q8NBP7 692 aaKnown RBP16.83■□□□□ 0.29
SYNE3-202ENST00000553340 NEDD4LQ96PU5 975 aa16.83■□□□□ 0.29
SYNE3-202ENST00000553340 MCCC1Q96RQ3 725 aaPredicted RBP16.83■□□□□ 0.29
SYNE3-202ENST00000553340 ASAH2Q9NR71 780 aa16.83■□□□□ 0.29
SYNE3-202ENST00000553340 TBKBP1A7MCY6 615 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 CYP7B1O75881 506 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 GADD45GO95257 159 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 GALTP07902 379 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 POLR2EP19388 210 aaKnown RBP16.83■□□□□ 0.28
SYNE3-202ENST00000553340 XCR1P46094 333 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 HMGA2P52926 109 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 DMPKQ09013 629 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 FCHO2Q0JRZ9 810 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 SPIN4Q56A73 249 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 ZNF852Q6ZMS4 543 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 VASH1Q7L8A9 365 aaPredicted RBP16.83■□□□□ 0.28
SYNE3-202ENST00000553340 AQP11Q8NBQ7 271 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 GPR156Q8NFN8 814 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 OR2AP1Q8NGE2 309 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 OR52N2Q8NGI0 321 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 OPALINQ96PE5 141 aa16.83■□□□□ 0.28
SYNE3-202ENST00000553340 SLC35A5Q9BS91 424 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms