RNA–Protein interactions for RNA: ENST00000553278.1

SCFD1-208, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 795 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-208ENST00000553278 MYBPC1Q00872 1141 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 DLG1Q12959 904 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 GPM6BQ13491 265 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 KIR2DS3Q14952 304 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 TPD52L1Q16890 204 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-208ENST00000553278 NADK2Q4G0N4 442 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 TMEM41BQ5BJD5 291 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 CMPK2Q5EBM0 449 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 CFAP157Q5JU67 520 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 ZNF626Q68DY1 528 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 FAM159AQ6UWV7 190 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 LPCAT2Q7L5N7 544 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 ADGRD2Q7Z7M1 963 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 CUZD1Q86UP6 607 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 CTAGE4Q8IX94 777 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 CENPLQ8N0S6 344 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-208ENST00000553278 DNAJC22Q8N4W6 341 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 OR2T12Q8NG77 320 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 OR52M1Q8NGK5 317 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 GANCQ8TET4 914 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 C17orf77Q96MU5 243 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 CDCA3Q99618 268 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-208ENST00000553278 POLR3CQ9BUI4 534 aaPredicted RBP5.28□□□□□ -1.56
SCFD1-208ENST00000553278 LAT2Q9GZY6 243 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 VPS33BQ9H267 617 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 RMND5AQ9H871 391 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 ACTR8Q9H981 624 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 PELI2Q9HAT8 420 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 GTSE1Q9NYZ3 720 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 PTGFRNQ9P2B2 879 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 CTNNA3Q9UI47 895 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 RALYQ9UKM9 306 aaKnown RBP5.28□□□□□ -1.56
SCFD1-208ENST00000553278 MRPS7Q9Y2R9 242 aaKnown RBP5.28□□□□□ -1.56
SCFD1-208ENST00000553278 R4GN57 208 aa5.28□□□□□ -1.56
SCFD1-208ENST00000553278 LOC101059948A0A1B0GTJ6 334 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 TULP2O00295 520 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 MAGEB3O15480 346 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 XPNPEP2O43895 674 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 TOM1L1O75674 476 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 MFN2O95140 757 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 EPOP01588 193 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 RRASP10301 218 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 CDH1P12830 882 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 ITGB6P18564 788 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 CCL11P51671 97 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 PGGT1BP53609 377 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 ZXDBP98169 803 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 GABPAQ06546 454 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 SRSF4Q08170 494 aaKnown RBP5.27□□□□□ -1.57
SCFD1-208ENST00000553278 LGALS3BPQ08380 585 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 MSLNQ13421 630 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-208ENST00000553278 SNTB2Q13425 540 aaKnown RBP5.27□□□□□ -1.57
SCFD1-208ENST00000553278 C9orf50Q5SZB4 431 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 HIST2H2AA3Q6FI13 130 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 COX8CQ7Z4L0 72 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 CPEB2Q7Z5Q1 589 aaKnown RBP5.27□□□□□ -1.57
SCFD1-208ENST00000553278 Q8N1X5 172 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 GBP7Q8N8V2 638 aaPredicted RBP5.27□□□□□ -1.57
SCFD1-208ENST00000553278 LRTM2Q8N967 370 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 FADS6Q8N9I5 356 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 ZNF473Q8WTR7 871 aaKnown RBP5.27□□□□□ -1.57
SCFD1-208ENST00000553278 TMED6Q8WW62 240 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 PIK3R3Q92569 461 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 RAB39BQ96DA2 213 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 CNDP1Q96KN2 507 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 TMEM117Q9H0C3 514 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 MTIF3Q9H2K0 278 aaKnown RBP5.27□□□□□ -1.57
SCFD1-208ENST00000553278 CD93Q9NPY3 652 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 DDX28Q9NUL7 540 aaKnown RBP5.27□□□□□ -1.57
SCFD1-208ENST00000553278 OCIAD1Q9NX40 245 aa5.27□□□□□ -1.57
SCFD1-208ENST00000553278 DYNC1LI1Q9Y6G9 523 aaKnown RBP5.27□□□□□ -1.57
SCFD1-208ENST00000553278 ABCC4O15439 1325 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 HNRNPCL2B2RXH8 293 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 PROB1E7EW31 1015 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 AP3B1O00203 1094 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 LANCL1O43813 399 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 KIF5CO60282 957 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 TSC22D2O75157 780 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 RHOBTB1O94844 696 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 CPNE6O95741 557 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 APRTP07741 180 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 CT45A8P0DMV1 189 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 CT45A9P0DMV2 189 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 ODC1P11926 461 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 EZRP15311 586 aaKnown RBP5.26□□□□□ -1.57
SCFD1-208ENST00000553278 EFNA1P20827 205 aaPredicted RBP5.26□□□□□ -1.57
SCFD1-208ENST00000553278 FCARP24071 287 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 RBMS1P29558 406 aaKnown RBP5.26□□□□□ -1.57
SCFD1-208ENST00000553278 CCKBRP32239 447 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 SLC1A3P43003 542 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 TDO2P48775 406 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 B3GALT5-AS1P59052 145 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 SPIBQ01892 262 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 HERC3Q15034 1050 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 SPHARQ15513 63 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 RABL6Q3YEC7 729 aaPredicted RBP5.26□□□□□ -1.57
SCFD1-208ENST00000553278 SLC36A3Q495N2 470 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 GPR33Q49SQ1 333 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 CT45A2Q5DJT8 189 aa5.26□□□□□ -1.57
SCFD1-208ENST00000553278 DCAF10Q5QP82 559 aa5.26□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.8 ms