RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 DUSP12Q9UNI6 340 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 CTDSP2O14595 271 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 SCAMP1O15126 338 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 HOXA2O43364 376 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 SH3BP5O60239 455 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 LRG1P02750 347 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 CBSLP0DN79 551 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 ZNF8P17098 575 aaPredicted RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 CBSP35520 551 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 NR4A2P43354 598 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 HNMTP50135 292 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 SLBPQ14493 270 aaKnown RBP eCLIP14.44□□□□□ -0.1
USP28-214ENST00000545540 LY6G5CQ5SRR4 150 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 TRMT11Q7Z4G4 463 aaKnown RBP14.44□□□□□ -0.1
USP28-214ENST00000545540 OR52E4Q8NGH9 312 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 ZNF675Q8TD23 568 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 ZNF558Q96NG5 402 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 ZNF226Q9NYT6 803 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 SNX11Q9Y5W9 270 aa14.44□□□□□ -0.1
USP28-214ENST00000545540 DSCR3O14972 297 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 TYRP14679 529 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 PTNP21246 168 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 COMMD6Q7Z4G1 85 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 C11orf65Q8NCR3 313 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 OR2AG1Q9H205 316 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 NECTIN3Q9NQS3 549 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 PCDHGB3Q9Y5G1 929 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 TMEM221A6NGB7 291 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 A8MV72 311 aaPredicted RBP14.43□□□□□ -0.1
USP28-214ENST00000545540 SEMG1P04279 462 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 C8AP07357 584 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 AZGP1P25311 298 aaKnown RBP14.43□□□□□ -0.1
USP28-214ENST00000545540 TMEM115Q12893 351 aaPredicted RBP14.43□□□□□ -0.1
USP28-214ENST00000545540 IL18R1Q13478 541 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 SCARB2Q14108 478 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 C11orf96Q7Z7L8 435 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 ZNF605Q86T29 641 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 UBE2J2Q8N2K1 259 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 OR8J2Q8NGG1 315 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 ZNF480Q8WV37 535 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 ZNF566Q969W8 418 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 PPP1R14BQ96C90 147 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 ECHDC3Q96DC8 303 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 TSEN34Q9BSV6 310 aaKnown RBP14.43□□□□□ -0.1
USP28-214ENST00000545540 GULP1Q9UBP9 304 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 SLC25A13Q9UJS0 675 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 THSD7BQ9C0I4 1608 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 C1orf226A1L170 272 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 TBPL1P62380 186 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 MXD1Q05195 221 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 RAB33AQ14088 237 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 ZNF404Q494X3 552 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 FAHD1Q6P587 224 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.43□□□□□ -0.1
USP28-214ENST00000545540 DDX53Q86TM3 631 aaKnown RBP14.43□□□□□ -0.1
USP28-214ENST00000545540 SVOPQ8N4V2 548 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 VPS37AQ8NEZ2 397 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 B3GNT7Q8NFL0 401 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 RHOXF1Q8NHV9 184 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 SLC38A4Q969I6 547 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 AP2M1Q96CW1 435 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 SPATA6Q9NWH7 488 aaPredicted RBP14.43□□□□□ -0.1
USP28-214ENST00000545540 TMED5Q9Y3A6 229 aa14.43□□□□□ -0.1
USP28-214ENST00000545540 PCM1Q15154 2024 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 MYO10Q9HD67 2058 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 RGS5O15539 181 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 ALPPL2P10696 532 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 PABPC1P11940 636 aaKnown RBP14.42□□□□□ -0.1
USP28-214ENST00000545540 SELENOWP63302 87 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 KCNC4Q03721 635 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 SMU1Q2TAY7 513 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 TPGS2Q68CL5 300 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 FAM20CQ8IXL6 584 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 HRASLS5Q96KN8 279 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 FAM129BQ96TA1 746 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 PALMDQ9NP74 551 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 FAM120CQ9NX05 1096 aaKnown RBP14.42□□□□□ -0.1
USP28-214ENST00000545540 SPG21Q9NZD8 308 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 TSC22D4Q9Y3Q8 395 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 PCDHGB1Q9Y5G3 927 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 IGLV3-16A0A075B6K0 115 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 GASTP01350 101 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 ADORA3P0DMS8 318 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 SOX3P41225 446 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 TSTQ16762 297 aaKnown RBP14.42□□□□□ -0.1
USP28-214ENST00000545540 CYP4Z2PQ8N1L4 340 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 DNAJC22Q8N4W6 341 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 AQP11Q8NBQ7 271 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 VMP1Q96GC9 406 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 MACROD1Q9BQ69 325 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 CLEC2DQ9UHP7 191 aa14.42□□□□□ -0.1
USP28-214ENST00000545540 PCYT1BQ9Y5K3 369 aaPredicted RBP14.42□□□□□ -0.1
USP28-214ENST00000545540 MAPK8P45983 427 aa14.41□□□□□ -0.1
USP28-214ENST00000545540 MVDP53602 400 aa14.41□□□□□ -0.1
USP28-214ENST00000545540 TEAD2Q15562 447 aa14.41□□□□□ -0.1
USP28-214ENST00000545540 GGTA1PQ4G0N0 100 aa14.41□□□□□ -0.1
USP28-214ENST00000545540 TPRG1LQ5T0D9 272 aa14.41□□□□□ -0.1
USP28-214ENST00000545540 HTR3DQ70Z44 454 aa14.41□□□□□ -0.1
USP28-214ENST00000545540 LYSMD2Q8IV50 215 aa14.41□□□□□ -0.1
USP28-214ENST00000545540 SFTPA1Q8IWL2 248 aa14.41□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms