RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 TCTN3Q6NUS6 607 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 NIPAL1Q6NVV3 410 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 METTL2BQ6P1Q9 378 aaKnown RBP8.72□□□□□ -1.01
SNHG1-215ENST00000540904 EMBQ6PCB8 327 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 ASB18Q6ZVZ8 466 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 LCA5Q86VQ0 697 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 TDRPQ86YL5 185 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 CYP4X1Q8N118 509 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 CNPY4Q8N129 248 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 TMEM151AQ8N4L1 468 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 OR7G3Q8NG95 312 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 OR11G2Q8NGC1 345 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 OR2W6PQ8NHA6 318 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 AENQ8WTP8 325 aaKnown RBP8.72□□□□□ -1.01
SNHG1-215ENST00000540904 MZB1Q8WU39 189 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 METTL21AQ8WXB1 218 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 ATP6V1E2Q96A05 226 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 GAL3ST3Q96A11 431 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 MS4A6EQ96DS6 147 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 SEC16BQ96JE7 1060 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 VPS50Q96JG6 964 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 FAR2Q96K12 515 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 NSUN5Q96P11 429 aaKnown RBP8.72□□□□□ -1.01
SNHG1-215ENST00000540904 CDK15Q96Q40 435 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 PARD6BQ9BYG5 372 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 VN1R1Q9GZP7 353 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 REXO4Q9GZR2 422 aaKnown RBP8.72□□□□□ -1.01
SNHG1-215ENST00000540904 AICDAQ9GZX7 198 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 RHBGQ9H310 441 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 NOL11Q9H8H0 719 aaKnown RBP8.72□□□□□ -1.01
SNHG1-215ENST00000540904 ATP13A2Q9NQ11 1180 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 GPR83Q9NYM4 423 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 PCTPQ9UKL6 214 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 PCDHGA9Q9Y5G4 932 aaKnown RBP8.72□□□□□ -1.01
SNHG1-215ENST00000540904 FER1L5A0AVI2 2057 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 HEATR5BQ9P2D3 2071 aa8.72□□□□□ -1.01
SNHG1-215ENST00000540904 A0A088AWK7 358 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 NSG1A0A0A6YYJ2 146 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 A8MT66 165 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 B8ZZF3 427 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 B4GALT2O60909 372 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 CDH16O75309 829 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 SH3BGRLO75368 114 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 CEACAM4O75871 244 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 TBX6O95947 436 aaPredicted RBP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 TGFB1P01137 390 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 PDGFAP04085 211 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 SBK3P0C264 359 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 C8orf89P0DMQ9 161 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 SMIM10L1P0DMW3 83 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 TAC1P20366 129 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 ZNF10P21506 573 aaPredicted RBP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 IL10P22301 178 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 ITGA3P26006 1051 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 DEKP35659 375 aaKnown RBP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 CCNG1P51959 295 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 EFNA3P52797 238 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 EEF1A2Q05639 463 aaKnown RBP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 AIMP2Q13155 320 aaKnown RBP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 DDX39BQ13838 428 aaKnown RBP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 E2F2Q14209 437 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 ABRAXAS2Q15018 415 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 CPSF6Q16630 551 aaKnown RBP eCLIP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 LIPJQ5W064 366 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 GRHL2Q6ISB3 625 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 TRIM40Q6P9F5 258 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 RPS27LQ71UM5 84 aaKnown RBP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 PRICKLE2Q7Z3G6 844 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 PARP9Q8IXQ6 854 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 LAS2Q8IYD9 372 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 GALNT16Q8N428 558 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 RNF175Q8N4F7 328 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 OR2L5Q8NG80 312 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 OR52B6Q8NGF0 335 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 HUS1BQ8NHY5 278 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 ZNF473Q8WTR7 871 aaKnown RBP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 CAVIN3Q969G5 261 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 TBC1D20Q96BZ9 403 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 SMIM10Q96HG1 83 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 OR1F2PQ96R84 312 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 F2RL3Q96RI0 385 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 MTERF1Q99551 399 aaKnown RBP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 NUDT9Q9BW91 350 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 ZNF160Q9HCG1 818 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 SEMA4BQ9NPR2 832 aaPredicted RBP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 DCDC2Q9UHG0 476 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 RNF11Q9Y3C5 154 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 PCDHGA11Q9Y5H2 935 aa8.71□□□□□ -1.02
SNHG1-215ENST00000540904 HEMK1Q9Y5R4 338 aaPredicted RBP8.71□□□□□ -1.02
SNHG1-215ENST00000540904 PCSK5Q92824 1860 aa8.7□□□□□ -1.02
SNHG1-215ENST00000540904 MDC1Q14676 2089 aaKnown RBP8.7□□□□□ -1.02
SNHG1-215ENST00000540904 IGHV1-45A0A0A0MS14 117 aa8.7□□□□□ -1.02
SNHG1-215ENST00000540904 IGHV3-20A0A0C4DH32 117 aa8.7□□□□□ -1.02
SNHG1-215ENST00000540904 FAM227AF5H4B4 570 aa8.7□□□□□ -1.02
SNHG1-215ENST00000540904 PSMD12O00232 456 aaPredicted RBP8.7□□□□□ -1.02
SNHG1-215ENST00000540904 SAP18O00422 153 aaKnown RBP8.7□□□□□ -1.02
SNHG1-215ENST00000540904 OR7A17O14581 309 aa8.7□□□□□ -1.02
SNHG1-215ENST00000540904 PCDH17O14917 1159 aa8.7□□□□□ -1.02
SNHG1-215ENST00000540904 B3GALT2O43825 422 aa8.7□□□□□ -1.02
SNHG1-215ENST00000540904 DLX3O60479 287 aa8.7□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms