RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 NPAS4Q8IUM7 802 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 DENND1CQ8IV53 801 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 DCBLD1Q8N8Z6 715 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 LPCAT1Q8NF37 534 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 OR6B3Q8NGW1 331 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 NANPQ8TBE9 248 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 CCDC115Q96NT0 180 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 COL21A1Q96P44 957 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 KCNA7Q96RP8 456 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 RAD9AQ99638 391 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 APOL2Q9BQE5 337 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 FAM126AQ9BYI3 521 aaPredicted RBP9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 ELOVL4Q9GZR5 314 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 MIXL1Q9H2W2 232 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 CASS4Q9NQ75 786 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 SNTG1Q9NSN8 517 aa9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 PRG3Q9Y2Y8 225 aaPredicted RBP9.13□□□□□ -0.95
CTNNA1-243ENST00000540387 A8MXK9 166 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 INMT-MINDY4F8WBC2 141 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 H3BM21 787 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 HPGDSO60760 199 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 MMP20O60882 483 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 APOL3O95236 402 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 NPPAP01160 153 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 HLA-FP30511 346 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 OR1G1P47890 313 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 RPP38P78345 283 aaKnown RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 YWHAHQ04917 246 aaPredicted RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 PTPRCAPQ14761 206 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 SMAD2Q15796 467 aaKnown RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 UNC50Q53HI1 259 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 RUNDC3AQ59EK9 446 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 CARD16Q5EG05 197 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 ZNF678Q5SXM1 525 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 WSCD1Q658N2 575 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 USP45Q70EL2 814 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 PID1Q7Z2X4 250 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 PSTKQ8IV42 348 aaKnown RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 SLC22A9Q8IVM8 553 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 DNAJC22Q8N4W6 341 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 LRRC17Q8N6Y2 441 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 OR2T12Q8NG77 320 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 FAM162AQ96A26 154 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 KIAA1191Q96A73 305 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 TMEM176AQ96HP8 235 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 DIRAS2Q96HU8 199 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 FAM193BQ96PV7 902 aaPredicted RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 CSPG4P5Q96PW8 444 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 TTPALQ9BTX7 342 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 RBCK1Q9BYM8 510 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 GABARAPL1Q9H0R8 117 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 CDCP1Q9H5V8 836 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 EXOSC4Q9NPD3 245 aaKnown RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 IL23AQ9NPF7 189 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 AIG1Q9NVV5 245 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 RANBP2P49792 3224 aaKnown RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 LOC102723532A0A0G2JNH3 316 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 TUBAL3A6NHL2 446 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 CCDC85CA6NKD9 419 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 FAM74A7A6NL05 159 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 CLCA1A8K7I4 914 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 AZIN1O14977 448 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 MICAL2O94851 1124 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 AP2A1O95782 977 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 HRGP04196 525 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 LHCGRP22888 699 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 PBX3P40426 434 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 HK3P52790 923 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 WDR5P61964 334 aaKnown RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 GPR17Q13304 367 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 CAMK1Q14012 370 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 DSG2Q14126 1118 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 TSC22D1Q15714 1073 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 FAM74A3Q4VXF1 159 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 PABPC1L2AQ5JQF8 200 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 C5orf46Q6UWT4 87 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 RANBP10Q6VN20 620 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 EIF3MQ7L2H7 374 aaKnown RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 DPH6Q7L8W6 267 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 KIAA0907Q7Z7F0 614 aaPredicted RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 STX19Q8N4C7 294 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 ZNF655Q8N720 491 aaPredicted RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 EFHBQ8N7U6 833 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 C12orf29Q8N999 325 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 C19orf18Q8NEA5 215 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 PUM2Q8TB72 1066 aaKnown RBP eCLIP9.12□□□□□ -0.956e-6■■■□□ 15.1
CTNNA1-243ENST00000540387 EXOC2Q96KP1 924 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 MID1IP1Q9NPA3 183 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 GPR83Q9NYM4 423 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 MLXQ9UH92 298 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 ZNF222Q9UK12 451 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 ZNF490Q9ULM2 529 aaPredicted RBP9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 MIA3Q5JRA6 1907 aa9.12□□□□□ -0.95
CTNNA1-243ENST00000540387 RALGAPA2Q2PPJ7 1873 aa9.11□□□□□ -0.95
CTNNA1-243ENST00000540387 PMS2P1A4D2B8 440 aa9.11□□□□□ -0.95
CTNNA1-243ENST00000540387 H7C2Y5 167 aa9.11□□□□□ -0.95
CTNNA1-243ENST00000540387 M0QYV0 167 aa9.11□□□□□ -0.95
CTNNA1-243ENST00000540387 LYRM1O43325 122 aa9.11□□□□□ -0.95
CTNNA1-243ENST00000540387 HOXA2O43364 376 aa9.11□□□□□ -0.95
CTNNA1-243ENST00000540387 SGCEO43556 437 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 129.6 ms