RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 C15orf38-AP3S2A0A0A6YYH1 394 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 ZNF839A8K0R7 811 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 DEFB108AA8MXU0 73 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 G3V3Y1 287 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 SGK494L7N484 410 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 UBFD1O14562 309 aaKnown RBP8.47□□□□□ -1.05
USP28-205ENST00000537706 NRP2O60462 931 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 ANXA9O76027 345 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 SLU7O95391 586 aaKnown RBP8.47□□□□□ -1.05
USP28-205ENST00000537706 AGFG1P52594 562 aaKnown RBP8.47□□□□□ -1.05
USP28-205ENST00000537706 ZBED6P86452 979 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 SRSF2Q01130 221 aaKnown RBP8.47□□□□□ -1.05
USP28-205ENST00000537706 DEFA6Q01524 100 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 TBL3Q12788 808 aaKnown RBP8.47□□□□□ -1.05
USP28-205ENST00000537706 TSTA3Q13630 321 aaPredicted RBP8.47□□□□□ -1.05
USP28-205ENST00000537706 GRB7Q14451 532 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 TYSND1Q2T9J0 566 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 POMZP3Q6PJE2 187 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 PACS1Q6VY07 963 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 NEIL3Q8TAT5 605 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 SKA2Q8WVK7 121 aaPredicted RBP8.47□□□□□ -1.05
USP28-205ENST00000537706 UCN3Q969E3 161 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 QRFPRQ96P65 431 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 TRIB1Q96RU8 372 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 RBCK1Q9BYM8 510 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 QPCTLQ9NXS2 382 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 RSPH14Q9UHP6 348 aa8.47□□□□□ -1.05
USP28-205ENST00000537706 BOKQ9UMX3 212 aaPredicted RBP8.47□□□□□ -1.05
USP28-205ENST00000537706 CD8B2A6NJW9 211 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 RRP9O43818 475 aaKnown RBP8.46□□□□□ -1.05
USP28-205ENST00000537706 ZFAND5O76080 213 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 FHP07954 510 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 CELA3AP09093 270 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 IL1RNP18510 177 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 CPOXP36551 454 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 CDKN1CP49918 316 aaPredicted RBP8.46□□□□□ -1.05
USP28-205ENST00000537706 ZNF140P52738 457 aaPredicted RBP8.46□□□□□ -1.05
USP28-205ENST00000537706 CASP9P55211 416 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 KCNJ2P63252 427 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 RCAN2Q14206 197 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 PHKG1Q16816 387 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 ODF2Q5BJF6 829 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 MILR1Q7Z6M3 343 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 ARHGEF39Q8N4T4 335 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 C3orf56Q8N813 242 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 GOLM1Q8NBJ4 401 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 PPHLN1Q8NEY8 458 aaKnown RBP8.46□□□□□ -1.05
USP28-205ENST00000537706 TFB1MQ8WVM0 346 aaKnown RBP8.46□□□□□ -1.05
USP28-205ENST00000537706 SMPDL3AQ92484 453 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 VMP1Q96GC9 406 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 SGCZQ96LD1 299 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 ZFP3Q96NJ6 502 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 PTCHD1Q96NR3 888 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 VPS9D1Q9Y2B5 631 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 PRSS21Q9Y6M0 314 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 VPS13CQ709C8 3753 aa8.46□□□□□ -1.05
USP28-205ENST00000537706 P2RX6O15547 441 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 TCF21O43680 179 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 DLX3O60479 287 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 RDH16O75452 317 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 AGTP01019 485 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 CD68P34810 354 aaPredicted RBP8.46□□□□□ -1.06
USP28-205ENST00000537706 PPARGP37231 505 aaPredicted RBP8.46□□□□□ -1.06
USP28-205ENST00000537706 GNG11P61952 73 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 PDCD2Q16342 344 aaPredicted RBP8.46□□□□□ -1.06
USP28-205ENST00000537706 RNF187Q5TA31 235 aaPredicted RBP8.46□□□□□ -1.06
USP28-205ENST00000537706 NIPAL1Q6NVV3 410 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 RASGEF1CQ8N431 466 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 PLD5Q8N7P1 536 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 CAMKVQ8NCB2 501 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 B3GNT7Q8NFL0 401 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 GTPBP3Q969Y2 492 aaKnown RBP8.46□□□□□ -1.06
USP28-205ENST00000537706 TBC1D20Q96BZ9 403 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 OXNAD1Q96HP4 312 aaPredicted RBP8.46□□□□□ -1.06
USP28-205ENST00000537706 WDR83Q9BRX9 315 aaKnown RBP8.46□□□□□ -1.06
USP28-205ENST00000537706 CALHM2Q9HA72 323 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 BARX1Q9HBU1 254 aaPredicted RBP8.46□□□□□ -1.06
USP28-205ENST00000537706 ACKR4Q9NPB9 350 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 ZNHIT6Q9NWK9 470 aaKnown RBP8.46□□□□□ -1.06
USP28-205ENST00000537706 FEZ2Q9UHY8 353 aaPredicted RBP8.46□□□□□ -1.06
USP28-205ENST00000537706 PCDHA13Q9Y5I0 950 aa8.46□□□□□ -1.06
USP28-205ENST00000537706 MBD3L3A6NE82 208 aaPredicted RBP8.45□□□□□ -1.06
USP28-205ENST00000537706 A8MUA0 341 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 ZNF487B1APH4 448 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 H7C0S8 307 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 B4GALT2O60909 372 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 AVILO75366 819 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 KDELR1P24390 212 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 CASQ1P31415 396 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 WNT3P56703 355 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 ABATP80404 500 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 PRPSAP1Q14558 356 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 FAM182AQ5T1J6 154 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 CYB5R2Q6BCY4 276 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 SCIMPQ6UWF3 145 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 RFX6Q8HWS3 928 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 CCDC170Q8IYT3 715 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 RFLNBQ8N5W9 214 aa8.45□□□□□ -1.06
USP28-205ENST00000537706 MBD3L2Q8NHZ7 208 aaPredicted RBP8.45□□□□□ -1.06
USP28-205ENST00000537706 SLC22A8Q8TCC7 542 aa8.45□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms