RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 COQ10AQ96MF6 247 aa12.63□□□□□ -0.39
LDLR-203ENST00000535915 KCNC2Q96PR1 638 aa12.63□□□□□ -0.39
LDLR-203ENST00000535915 ZCCHC2Q9C0B9 1178 aaKnown RBP12.63□□□□□ -0.39
LDLR-203ENST00000535915 EPHX3Q9H6B9 360 aa12.63□□□□□ -0.39
LDLR-203ENST00000535915 ACOT13Q9NPJ3 140 aa12.63□□□□□ -0.39
LDLR-203ENST00000535915 DMRT3Q9NQL9 472 aa12.63□□□□□ -0.39
LDLR-203ENST00000535915 SPASTQ9UBP0 616 aa12.63□□□□□ -0.39
LDLR-203ENST00000535915 IRAK3Q9Y616 596 aa12.63□□□□□ -0.39
LDLR-203ENST00000535915 AP1M2Q9Y6Q5 423 aa12.63□□□□□ -0.39
LDLR-203ENST00000535915 FOXE1O00358 373 aaPredicted RBP12.62□□□□□ -0.39
LDLR-203ENST00000535915 TOR1BO14657 336 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 WBP4O75554 376 aaKnown RBP12.62□□□□□ -0.39
LDLR-203ENST00000535915 SERPINB7O75635 380 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 SOD1P00441 154 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 GPR1P46091 355 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 OR1E2P47887 323 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 PRIM2P49643 509 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 RAB15P59190 212 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 VBP1P61758 197 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 ZNF697Q5TEC3 545 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 Q6ZPB1 254 aaPredicted RBP12.62□□□□□ -0.39
LDLR-203ENST00000535915 GRASPQ7Z6J2 395 aaPredicted RBP12.62□□□□□ -0.39
LDLR-203ENST00000535915 FAM124AQ86V42 546 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 IGFN1Q86VF2 1251 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 ENTHD1Q8IYW4 607 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 CENPSQ8N2Z9 138 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 OR9A1PQ8NGU1 263 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 WDR48Q8TAF3 677 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 NDNFQ8TB73 568 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 PPCDCQ96CD2 204 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 YIPF6Q96EC8 236 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 SH3YL1Q96HL8 342 aaPredicted RBP12.62□□□□□ -0.39
LDLR-203ENST00000535915 HRASLS5Q96KN8 279 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 ZNF347Q96SE7 839 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 PITX2Q99697 317 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 BCL7BQ9BQE9 202 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 CRISPLD2Q9H0B8 497 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 NDUFAF4Q9P032 175 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 ACSL6Q9UKU0 697 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 LYVE1Q9Y5Y7 322 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 CLDN25C9JDP6 229 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 ADAMDEC1O15204 470 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 FURINP09958 794 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 HLA-EP13747 358 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 ACVR2AP27037 513 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 MVDP53602 400 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 SCARB2Q14108 478 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 ZNF658BQ4V348 819 aaPredicted RBP12.62□□□□□ -0.39
LDLR-203ENST00000535915 BCL7AQ4VC05 210 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 TCEAL5Q5H9L2 206 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 GCNT6Q5T4J0 391 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 PRSS48Q7RTY5 328 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 P3H2Q8IVL5 708 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 LAS2Q8IYD9 372 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 OR52J3Q8NH60 311 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 OR5AK3PQ8NH89 298 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 GOT1L1Q8NHS2 421 aaPredicted RBP12.62□□□□□ -0.39
LDLR-203ENST00000535915 NFKBIDQ8NI38 313 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 PUM2Q8TB72 1066 aaKnown RBP eCLIP12.62□□□□□ -0.392e-36■■■■■ 39.1
LDLR-203ENST00000535915 C16orf78Q8WTQ4 265 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 SLC5A11Q8WWX8 675 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 NUS1Q96E22 293 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 FEVQ99581 238 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 SGPP1Q9BX95 441 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 NECTIN3Q9NQS3 549 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 PCDHGA6Q9Y5G7 932 aa12.62□□□□□ -0.39
LDLR-203ENST00000535915 SLC9A3R1O14745 358 aaPredicted RBP12.61□□□□□ -0.39
LDLR-203ENST00000535915 LILRB5O75023 590 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 VIPP01282 170 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 CISD3P0C7P0 127 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 ADH5P11766 374 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 IDUAP35475 653 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 CHI3L1P36222 383 aaPredicted RBP12.61□□□□□ -0.39
LDLR-203ENST00000535915 TMED10P49755 219 aaKnown RBP12.61□□□□□ -0.39
LDLR-203ENST00000535915 TAS2R50P59544 299 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 MVKQ03426 396 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 TAP2Q03519 686 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 PPIGQ13427 754 aaKnown RBP eCLIP12.61□□□□□ -0.393e-7■■□□□ 11.4
LDLR-203ENST00000535915 ZNF846Q147U1 533 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 RGS21Q2M5E4 152 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 TSEN54Q7Z6J9 526 aaKnown RBP12.61□□□□□ -0.39
LDLR-203ENST00000535915 C12orf40Q86WS4 652 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 OR52N2Q8NGI0 321 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 APH1BQ8WW43 257 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 IPCEF1Q8WWN9 437 aaPredicted RBP12.61□□□□□ -0.39
LDLR-203ENST00000535915 WDR34Q96EX3 536 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 GABARAPL3Q9BY60 117 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 SPNS1Q9H2V7 528 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 HMG20AQ9NP66 347 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 TMEM184CQ9NVA4 438 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 ERGIC3Q9Y282 383 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 MAP4K5Q9Y4K4 846 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 NUMA1Q14980 2115 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 PLK4O00444 970 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 SPINT1O43278 529 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 TNFRSF21O75509 655 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 PRNPP04156 253 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 CYP17A1P05093 508 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 KLK1P06870 262 aa12.61□□□□□ -0.39
LDLR-203ENST00000535915 EPCAMP16422 314 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms