RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 FAUP35544 74 aaKnown RBP12.22□□□□□ -0.45
USP53-209ENST00000514665 TUBA1BP68363 451 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 SLC3A1Q07837 685 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 GALNT1Q10472 559 aaPredicted RBP12.22□□□□□ -0.45
USP53-209ENST00000514665 GINS1Q14691 196 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 WSCD2Q2TBF2 565 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 ANKDD1AQ495B1 522 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 TUBA1AQ71U36 451 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 C7orf61Q8IZ16 206 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 CD200R1Q8TD46 325 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 RNF31Q96EP0 1072 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 IL26Q9NPH9 171 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 IL17CQ9P0M4 197 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 NFKBIL1Q9UBC1 381 aaPredicted RBP12.22□□□□□ -0.45
USP53-209ENST00000514665 MAGED1Q9Y5V3 778 aaPredicted RBP12.22□□□□□ -0.45
USP53-209ENST00000514665 CACNA1SQ13698 1873 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 C2orf92A0A1B0GVN3 265 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 AREL1O15033 823 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 AKT2P31751 481 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 HSD17B2P37059 387 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 NPRL3Q12980 569 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 SP140Q13342 867 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 BPIFB1Q8TDL5 484 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 SLC22A4Q9H015 551 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 MTG2Q9H4K7 406 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 RMI1Q9H9A7 625 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 PAK1IP1Q9NWT1 392 aaPredicted RBP12.22□□□□□ -0.45
USP53-209ENST00000514665 UCKL1Q9NWZ5 548 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 VAPAQ9P0L0 249 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 C4AP0C0L4 1744 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 C4BP0C0L5 1744 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 M0QZQ0 153 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 GJB3O75712 270 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 IFNA6P05013 189 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 LAMP1P11279 417 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 GABRB3P28472 473 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 TIA1P31483 386 aaKnown RBP eCLIP12.22□□□□□ -0.45
USP53-209ENST00000514665 OR52E8Q6IFG1 317 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 UGT2A3Q6UWM9 527 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 FAM46DQ8NEK8 389 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 NKD1Q969G9 470 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 SIPA1Q96FS4 1042 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 DOHHQ9BU89 302 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 ASPNQ9BXN1 380 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 BCL2L14Q9BZR8 327 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 SETD1AO15047 1707 aaKnown RBP12.22□□□□□ -0.45
USP53-209ENST00000514665 ZNF860A6NHJ4 632 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 OR6C70A6NIJ9 312 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 A8MV72 311 aaPredicted RBP12.22□□□□□ -0.45
USP53-209ENST00000514665 H3BSH0 61 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 SLC1A7O00341 560 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 TEX28O15482 410 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 SMAD6O43541 496 aaKnown RBP12.22□□□□□ -0.45
USP53-209ENST00000514665 C1GALT1C1LP0DN25 315 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 SYN1P17600 705 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 CELP19835 753 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 GPX3P22352 226 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 CD70P32970 193 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 TOR1AIP1Q5JTV8 583 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 LIPJQ5W064 366 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 CARM1Q86X55 608 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 OR13J1Q8NGT2 312 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 ZNF675Q8TD23 568 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 GPER1Q99527 375 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 SLC30A2Q9BRI3 323 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 TTTY10Q9BZA0 68 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 CKLFQ9UBR5 152 aa12.22□□□□□ -0.45
USP53-209ENST00000514665 MRTO4Q9UKD2 239 aaKnown RBP12.22□□□□□ -0.45
USP53-209ENST00000514665 A8MUA0 341 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 SOCS7O14512 581 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 MAGEB3O15480 346 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 FGF4P08620 206 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 GSTM3P21266 225 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 EXOC3L2Q2M3D2 409 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 C6orf183Q5T699 404 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 NCEH1Q6PIU2 408 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 LARP4Q71RC2 724 aaKnown RBP eCLIP12.21□□□□□ -0.45
USP53-209ENST00000514665 LINGO2Q7L985 606 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 TMEM125Q96AQ2 219 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 F2RL3Q96RI0 385 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 SLC38A3Q99624 504 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 RAB11FIP5Q9BXF6 653 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 SEZ6LQ9BYH1 1024 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 GMPR2Q9P2T1 348 aaKnown RBP12.21□□□□□ -0.45
USP53-209ENST00000514665 WDR45Q9Y484 360 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 PCDHB14Q9Y5E9 798 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 PCDHGA10Q9Y5H3 936 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 H0YJX3 145 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 FCER2P06734 321 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 JUPP14923 745 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 CD72P21854 359 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 IGFALSP35858 605 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 RGRP47804 291 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 NCS1P62166 190 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 ST3GAL3Q11203 375 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 CMPK2Q5EBM0 449 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 C10orf62Q5T681 223 aaPredicted RBP12.21□□□□□ -0.45
USP53-209ENST00000514665 ZNF517Q6ZMY9 492 aaPredicted RBP12.21□□□□□ -0.45
USP53-209ENST00000514665 DOK4Q8TEW6 326 aa12.21□□□□□ -0.45
USP53-209ENST00000514665 PPP1R14BQ96C90 147 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms