RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 CLIP3Q96DZ5 547 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 AIFM2Q9BRQ8 373 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 TMED9Q9BVK6 235 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 RBM38Q9H0Z9 239 aaKnown RBP10.87□□□□□ -0.67
TCOF1-211ENST00000513346 OR51E2Q9H255 320 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 IGSF5Q9NSI5 407 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 MAU2Q9Y6X3 613 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 FXYD6-FXYD2A0A087WZ82 144 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 TRBC2A0A5B9 178 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 AP2S1P53680 142 aaPredicted RBP10.87□□□□□ -0.67
TCOF1-211ENST00000513346 ISCA2Q86U28 154 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 CEP76Q8TAP6 659 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 SH3RF2Q8TEC5 729 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 WRAP53Q9BUR4 548 aaKnown RBP10.87□□□□□ -0.67
TCOF1-211ENST00000513346 FXYD6Q9H0Q3 95 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 FAM120CQ9NX05 1096 aaKnown RBP10.87□□□□□ -0.67
TCOF1-211ENST00000513346 ERVW-1Q9UQF0 538 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 CORINQ9Y5Q5 1042 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 NUMBLQ9Y6R0 609 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 TAF1P21675 1872 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 NAV1Q8NEY1 1877 aa10.87□□□□□ -0.67
TCOF1-211ENST00000513346 APOC3P02656 99 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 MNDAP41218 407 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 DGKEP52429 567 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 MAD2L1BPQ15013 274 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 NRARPQ7Z6K4 114 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 TICAM1Q8IUC6 712 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 GJD3Q8N144 294 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 OXR1Q8N573 874 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 TCEANCQ8N8B7 351 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 RPL3LQ92901 407 aaKnown RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 TSGA13Q96PP4 275 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 ABCG5Q9H222 651 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 TMEM45AQ9NWC5 275 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 TRPS1Q9UHF7 1281 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 GRXCR2A6NFK2 248 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 FAM155AB1AL88 458 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 LOC730098B7Z3J9 87 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 EMP3P54852 163 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 PPP2R2BQ00005 443 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 RGS1Q08116 209 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 NAE1Q13564 534 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 ZNHIT3Q15649 155 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 SWI5Q1ZZU3 235 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 SPATC1Q76KD6 591 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 PIGXQ8TBF5 258 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 ZBED3Q96IU2 234 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 PKP4Q99569 1192 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 WDR83Q9BRX9 315 aaKnown RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 HAPLN2Q9GZV7 340 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 RANGRFQ9HD47 186 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 CD300AQ9UGN4 299 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 BOLA1Q9Y3E2 137 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 NOX1Q9Y5S8 564 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 AKAP11Q9UKA4 1901 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 COL18A1P39060 1754 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 OR2AG2A6NM03 316 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 TTC34A8MYJ7 566 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 OR10H2O60403 315 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 RAB36O95755 333 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 ECDO95905 644 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 S1PR4O95977 384 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 IFNGP01579 166 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 H1F0P07305 194 aaKnown RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 SRPRAP08240 638 aaKnown RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 EBLN1P0CF75 366 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 IDSP22304 550 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 IL4RP24394 825 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 OR3A3P47888 321 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 CASP9P55211 416 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 ADGRF1Q5T601 910 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 C22orf42Q6IC83 251 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 DENND6BQ8NEG7 585 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 TMEM175Q9BSA9 504 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 IFT27Q9BW83 186 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 TSSK6Q9BXA6 273 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 PPA2Q9H2U2 334 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 RC3H2Q9HBD1 1191 aaKnown RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 ZNF69Q9UC07 566 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 ITGB4P16144 1822 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 A0A1W2PQL4 384 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 IQCF5A8MTL0 148 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 ITGAMP11215 1152 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 RCAN2Q14206 197 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 GALEQ14376 348 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 PLA2G4EQ3MJ16 856 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 ATXN7L2Q5T6C5 722 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 HAGHLQ6PII5 290 aaPredicted RBP10.86□□□□□ -0.67
TCOF1-211ENST00000513346 RETREG3Q86VR2 466 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 FNIP2Q9P278 1114 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 VPS29Q9UBQ0 182 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 CD84Q9UIB8 345 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 ADAMTS5Q9UNA0 930 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 N6AMT1Q9Y5N5 214 aa10.86□□□□□ -0.67
TCOF1-211ENST00000513346 IGKV6D-21A0A0A0MT36 114 aa10.85□□□□□ -0.67
TCOF1-211ENST00000513346 LYRM1O43325 122 aa10.85□□□□□ -0.67
TCOF1-211ENST00000513346 RP2O75695 350 aa10.85□□□□□ -0.67
TCOF1-211ENST00000513346 TNFSF8P32971 234 aa10.85□□□□□ -0.67
TCOF1-211ENST00000513346 CDK6Q00534 326 aa10.85□□□□□ -0.67
TCOF1-211ENST00000513346 SMCO1Q147U7 214 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms