RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 GHITMQ9H3K2 345 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 ZHX3Q9H4I2 956 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 MED4Q9NPJ6 270 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 CYTL1Q9NRR1 136 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 CWC25Q9NXE8 425 aaPredicted RBP1.81□□□□□ -2.12
NUP54-208ENST00000508604 PKD2L2Q9NZM6 624 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 THYN1Q9P016 225 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 SWAP70Q9UH65 585 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 DDX25Q9UHL0 483 aaKnown RBP1.81□□□□□ -2.12
NUP54-208ENST00000508604 PILRBQ9UKJ0 227 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 SPATA2Q9UM82 520 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 CPQQ9Y646 472 aa1.81□□□□□ -2.12
NUP54-208ENST00000508604 TRAV24A0A0B4J272 114 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 ZSCAN5CA6NGD5 496 aaPredicted RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 GLTPD2A6NH11 291 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 ACHEP22303 614 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 CASQ1P31415 396 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 STAT2P52630 851 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 UBXN2AP68543 259 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 PRKCEQ02156 737 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 RASGEF1BQ0VAM2 473 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 C1QTNF12Q5T7M4 302 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 ARMCX5Q6P1M9 558 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 ZNF600Q6ZNG1 722 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 IL17RELQ6ZVW7 336 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 Q7L0L9 218 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 PCGF5Q86SE9 256 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 CREBRFQ8IUR6 639 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 Q8N9L7 120 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 OR1B1Q8NGR6 318 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 PGM2Q96G03 612 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 CFAP53Q96M91 514 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 RTBDNQ9BSG5 229 aaPredicted RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 CENPOQ9BU64 300 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 ACTL8Q9H568 366 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 SYNCQ9H7C4 482 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 C3orf14Q9HBI5 128 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 RAVER2Q9HCJ3 691 aaKnown RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 ARMCX1Q9P291 453 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 TBC1D29Q9UFV1 150 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 SLC12A6Q9UHW9 1150 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 PTRH2Q9Y3E5 179 aaKnown RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 NEDD4P46934 1319 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 SALL1Q9NSC2 1324 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 SCRIBQ14160 1630 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 FSD2A1L4K1 749 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 CCL24O00175 119 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 ADAMDEC1O15204 470 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 HMMRO75330 724 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 PGM3O95394 542 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 TPM3P06753 285 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 YES1P07947 543 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 EPCAMP16422 314 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 PAX7P23759 505 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 FASP25445 335 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 TDO2P48775 406 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 ASCL1P50553 236 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 PSMC6P62333 389 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 HMGN5P82970 282 aaKnown RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 SARNPP82979 210 aaKnown RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 CKAP4Q07065 602 aaKnown RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 CRMP1Q14194 572 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 SHHQ15465 462 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 ECSCRQ19T08 205 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 ISXQ2M1V0 245 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 NAXDQ8IW45 347 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 RNF175Q8N4F7 328 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 APPL2Q8NEU8 664 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 BEST4Q8NFU0 473 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 TSPAN14Q8NG11 270 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 GTSF1Q8WW33 167 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 ROBO4Q8WZ75 1007 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 NXPE2Q96DL1 559 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 RSRC1Q96IZ7 334 aaKnown RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 TREX2Q9BQ50 279 aaPredicted RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 TEX13AQ9BXU3 409 aaPredicted RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 SLC2A11Q9BYW1 496 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 RSPH9Q9H1X1 276 aaPredicted RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 RRAGDQ9NQL2 400 aaPredicted RBP1.8□□□□□ -2.12
NUP54-208ENST00000508604 SUN2Q9UH99 717 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 KIF3AQ9Y496 699 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 COLEC10Q9Y6Z7 277 aa1.8□□□□□ -2.12
NUP54-208ENST00000508604 NINLQ9Y2I6 1382 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 FER1L5A0AVI2 2057 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 PES1O00541 588 aaKnown RBP1.79□□□□□ -2.12
NUP54-208ENST00000508604 DYNC1I1O14576 645 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 AHCYL1O43865 530 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 IGHG1P01857 330 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 LDHCP07864 332 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 ASNSP08243 561 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 MAGEA8P43361 318 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 FNTAP49354 379 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 HMGCS2P54868 508 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 NAP1L1P55209 391 aaKnown RBP1.79□□□□□ -2.12
NUP54-208ENST00000508604 ILF2Q12905 390 aaKnown RBP1.79□□□□□ -2.12
NUP54-208ENST00000508604 SPANXN4Q5MJ08 99 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 SPATA1Q5VX52 437 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 CGB2Q6NT52 195 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 CCDC73Q6ZRK6 1079 aa1.79□□□□□ -2.12
NUP54-208ENST00000508604 KIR2DL5BQ8NHK3 375 aa1.79□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms