RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 SORBS1Q9BX66 1292 aaKnown RBP11.3□□□□□ -0.6
CUX1-210ENST00000497815 SPRY4Q9C004 299 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 ILKAPQ9H0C8 392 aaPredicted RBP11.3□□□□□ -0.6
CUX1-210ENST00000497815 CCDC86Q9H6F5 360 aaKnown RBP11.3□□□□□ -0.6
CUX1-210ENST00000497815 ENAMQ9NRM1 1142 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 PNPOQ9NVS9 261 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 THAP1Q9NVV9 213 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 TSC22D4Q9Y3Q8 395 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 SLC22A7Q9Y694 548 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 C1QTNF9BB2RNN3 333 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 KLF11O14901 512 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 PIP5K1BO14986 540 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 GALR3O60755 368 aaPredicted RBP11.29□□□□□ -0.6
CUX1-210ENST00000497815 FGF4P08620 206 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 LINC00032P0C843 101 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 C1QTNF9P0C862 333 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 KITP10721 976 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 ITGAXP20702 1163 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 FBLP22087 321 aaKnown RBP11.29□□□□□ -0.6
CUX1-210ENST00000497815 CD82P27701 267 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 SSR2P43308 183 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 RPL14P50914 215 aaKnown RBP11.29□□□□□ -0.6
CUX1-210ENST00000497815 MAT1AQ00266 395 aaKnown RBP11.29□□□□□ -0.6
CUX1-210ENST00000497815 GUCY1A3Q02108 690 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 BTKQ06187 659 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 TGM3Q08188 693 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 CSTF3Q12996 717 aaKnown RBP11.29□□□□□ -0.6
CUX1-210ENST00000497815 FAM53BQ14153 422 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 HERC3Q15034 1050 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 PDCD2Q16342 344 aaPredicted RBP11.29□□□□□ -0.6
CUX1-210ENST00000497815 IMPG1Q17R60 797 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 SYT16Q17RD7 645 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 ADPRMQ3LIE5 342 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 NKAIN1Q4KMZ8 207 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 TMEM35AQ53FP2 167 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 SPDYAQ5MJ70 313 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 C10orf62Q5T681 223 aaPredicted RBP11.29□□□□□ -0.6
CUX1-210ENST00000497815 DEPDC1Q5TB30 811 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 ARHGAP40Q5TG30 622 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 MLIPQ5VWP3 458 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 PRMT9Q6P2P2 845 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 ABHD17CQ6PCB6 329 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 FAM47EQ6ZV65 393 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 UBE3DQ7Z6J8 389 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 CACNA2D3Q8IZS8 1091 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 ESX1Q8N693 406 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 OR5T3Q8NGG3 340 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 PROKR1Q8TCW9 393 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 RGMAQ96B86 450 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 PPP1R36Q96LQ0 422 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 MAGEB18Q96M61 343 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 SERPINI1Q99574 410 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 MRPL1Q9BYD6 325 aaKnown RBP11.29□□□□□ -0.6
CUX1-210ENST00000497815 ACPTQ9BZG2 426 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 CHST8Q9H2A9 424 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 COPS7BQ9H9Q2 264 aaPredicted RBP11.29□□□□□ -0.6
CUX1-210ENST00000497815 ZNF304Q9HCX3 659 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 LHX9Q9NQ69 397 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 HCN3Q9P1Z3 774 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 IFT80Q9P2H3 777 aaPredicted RBP11.29□□□□□ -0.6
CUX1-210ENST00000497815 MARCOQ9UEW3 520 aaPredicted RBP11.29□□□□□ -0.6
CUX1-210ENST00000497815 PADI1Q9ULC6 663 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 CDC14AQ9UNH5 594 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 DNAJC15Q9Y5T4 150 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 HEATR5BQ9P2D3 2071 aa11.29□□□□□ -0.6
CUX1-210ENST00000497815 PLPP1O14494 284 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 TLX3O43711 291 aaPredicted RBP11.28□□□□□ -0.6
CUX1-210ENST00000497815 DNAJB6O75190 326 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 SNUPNO95149 360 aaKnown RBP11.28□□□□□ -0.6
CUX1-210ENST00000497815 NSA2O95478 260 aaKnown RBP11.28□□□□□ -0.6
CUX1-210ENST00000497815 SMIM10L1P0DMW3 83 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 LIPCP11150 499 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 CERS1P27544 350 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 PCBP4P57723 403 aaKnown RBP11.28□□□□□ -0.6
CUX1-210ENST00000497815 OCRLQ01968 901 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 CUL3Q13618 768 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 AP5B1Q2VPB7 878 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 UGT3A2Q3SY77 523 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 ZNF385CQ66K41 422 aaPredicted RBP11.28□□□□□ -0.6
CUX1-210ENST00000497815 SHISA5Q8N114 240 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 AFAP1L2Q8N4X5 818 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 IL22RA1Q8N6P7 574 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 GBP7Q8N8V2 638 aaPredicted RBP11.28□□□□□ -0.6
CUX1-210ENST00000497815 AMER3Q8N944 861 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 CT55Q8WUE5 264 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 FGF11Q92914 225 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 NKD1Q969G9 470 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 MVB12AQ96EY5 273 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 SMIM10Q96HG1 83 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 LRFN5Q96NI6 719 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 KCNC2Q96PR1 638 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 TUBB1Q9H4B7 451 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 BRF2Q9HAW0 419 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 SLCO1B3Q9NPD5 702 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 SLC22A11Q9NSA0 550 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 NMRK1Q9NWW6 199 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 VPS29Q9UBQ0 182 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 GPN3Q9UHW5 284 aaPredicted RBP11.28□□□□□ -0.6
CUX1-210ENST00000497815 ACSL6Q9UKU0 697 aa11.28□□□□□ -0.6
CUX1-210ENST00000497815 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms