RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 SLC2A11Q9BYW1 496 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 SLC22A4Q9H015 551 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 C1orf21Q9H246 121 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 ZNF860A6NHJ4 632 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 GLOD5A6NK44 160 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 BEST1O76090 585 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 C6orf47O95873 294 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 EDNRBP24530 442 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 BMP8BP34820 402 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 ST3GAL3Q11203 375 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 SYT16Q17RD7 645 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 C17orf99Q6UX52 265 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 BMP8AQ7Z5Y6 402 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 C12orf43Q96C57 262 aaKnown RBP12.7□□□□□ -0.38
PTPRF-215ENST00000496447 HCN2Q9UL51 889 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 DLGAP4Q9Y2H0 992 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 PCDHGB1Q9Y5G3 927 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 TLR4O00206 839 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 IFI30P13284 250 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 NTSR1P30989 418 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 HOXD13P35453 343 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 RIN1Q13671 783 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 SLC22A16Q86VW1 577 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 OR4K14Q8NGD5 310 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 SGCDQ92629 289 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 OR2B2Q9GZK3 357 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 UPB1Q9UBR1 384 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 TEX264Q9Y6I9 313 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 CAPN5O15484 640 aaPredicted RBP12.7□□□□□ -0.38
PTPRF-215ENST00000496447 HOXD12P35452 270 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 UFM1P61960 85 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 LASP1Q14847 261 aaKnown RBP12.7□□□□□ -0.38
PTPRF-215ENST00000496447 ASPGQ86U10 573 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 C7orf43Q8WVR3 580 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 TSGA13Q96PP4 275 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 KCNC2Q96PR1 638 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 SPEF2Q9C093 1822 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 IGLON5A6NGN9 336 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 AQP12BA6NM10 295 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 ARPC2O15144 300 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 CA3P07451 260 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 G6PDP11413 515 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 GPRIN1Q7Z2K8 1008 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 AQP12AQ8IXF9 295 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 ZDHHC14Q8IZN3 488 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 PTCHD1Q96NR3 888 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 B3GNT4Q9C0J1 378 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 POLR2J2Q9GZM3 115 aaKnown RBP12.7□□□□□ -0.38
PTPRF-215ENST00000496447 XYLT2Q9H1B5 865 aa12.7□□□□□ -0.38
PTPRF-215ENST00000496447 FAM72CH0Y354 149 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 J3QRK9 145 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 TP53I11O14683 189 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 TNFRSF10BO14763 440 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 ITGA10O75578 1167 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 CDC123O75794 336 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-215ENST00000496447 FBLP22087 321 aaKnown RBP12.69□□□□□ -0.38
PTPRF-215ENST00000496447 NR4A1P22736 598 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 GGT5P36269 586 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 HTRA3P83110 453 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 FAM72AQ5TYM5 149 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 EMC10Q5UCC4 262 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 FAM72DQ6L9T8 149 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 CYP4V2Q6ZWL3 525 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-215ENST00000496447 LINGO2Q7L985 606 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 FAM72BQ86X60 149 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 NRROSQ86YC3 692 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 GPALPP1Q8IXQ4 340 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 ELMOD2Q8IZ81 293 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 LINC00471Q8N535 108 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 JPH3Q8WXH2 748 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-215ENST00000496447 FBXL8Q96CD0 374 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 POPDC3Q9HBV1 291 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 FTSJ1Q9UET6 329 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 HTR3EA5X5Y0 456 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 APOL3O95236 402 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 EIF1AXP47813 144 aaKnown RBP12.69□□□□□ -0.38
PTPRF-215ENST00000496447 OR3A3P47888 321 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 OR3A2P47893 321 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 ZNF763Q0D2J5 394 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 PGBD2Q6P3X8 592 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 SORCS1Q8WY21 1168 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 SH3YL1Q96HL8 342 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-215ENST00000496447 OR52B2Q96RD2 323 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 TPT1P8Q9HAU6 139 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 MS4A12Q9NXJ0 267 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 PRODH2Q9UF12 536 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 CENPBD1B2RD01 187 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 OR1I1O60431 355 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 SYNGR4O95473 234 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 RPLP0P05388 317 aaKnown RBP12.69□□□□□ -0.38
PTPRF-215ENST00000496447 MERTKQ12866 999 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 CST6Q15828 149 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 ZNF630Q2M218 657 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-215ENST00000496447 OGFOD2Q6N063 350 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 ZNF627Q7L945 461 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 UMODL1-AS1Q8N2C9 162 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 YIPF7Q8N8F6 280 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.69□□□□□ -0.38
PTPRF-215ENST00000496447 WDR45Q9Y484 360 aa12.69□□□□□ -0.38
PTPRF-215ENST00000496447 ZNF487B1APH4 448 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms