RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 RBBP8Q99708 897 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 UTP23Q9BRU9 249 aaKnown RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 UNKQ9C0B0 810 aaKnown RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 PITHD1Q9GZP4 211 aaPredicted RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 RAB17Q9H0T7 212 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 RHBGQ9H310 441 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 CNOT10Q9H9A5 744 aaKnown RBP11.98□□□□□ -0.49
PTPRF-214ENST00000496043 CAB39LQ9H9S4 337 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 GPRC5BQ9NZH0 403 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 GRHL1Q9NZI5 618 aa11.98□□□□□ -0.49
PTPRF-214ENST00000496043 ICE1Q9Y2F5 2266 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 A0A1B0GUH1 482 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 TCRBV9S1A1TA0A576 114 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 CTAGE15A4D2H0 777 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 ANKDD1BA6NHY2 528 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 CDK2AP1O14519 115 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 TAPBPO15533 448 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 STK16O75716 305 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 WISP3O95389 354 aaPredicted RBP11.97□□□□□ -0.49
PTPRF-214ENST00000496043 STSP08842 583 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 GSTM2P28161 218 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 CD96P40200 585 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 MAGEA4P43358 317 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 SLC26A5P58743 744 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 GPX6P59796 221 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 BTN3A2P78410 334 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 BTG2P78543 158 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 ZNF766Q5HY98 468 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 QSOX2Q6ZRP7 698 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 CTAGE6Q86UF2 777 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 CRLF3Q8IUI8 442 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 BEST3Q8N1M1 668 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 SLC5A8Q8N695 610 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 HORMAD2Q8N7B1 307 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 ARMC2Q8NEN0 867 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 CCT6BQ92526 530 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 SEC16BQ96JE7 1060 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 GPR22Q99680 433 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 PHACTR1Q9C0D0 580 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 CDCP1Q9H5V8 836 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 PRDM9Q9NQV7 894 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 DNAJC11Q9NVH1 559 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 WWOXQ9NZC7 414 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 CD274Q9NZQ7 290 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 PCDHGB6Q9Y5F9 930 aa11.97□□□□□ -0.49
PTPRF-214ENST00000496043 SPENQ96T58 3664 aaKnown RBP11.97□□□□□ -0.49
PTPRF-214ENST00000496043 PRRC2CQ9Y520 2896 aaKnown RBP11.97□□□□□ -0.49
PTPRF-214ENST00000496043 A0A088AWK7 358 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 FAM227AF5H4B4 570 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 PHGDHO43175 533 aaKnown RBP11.96□□□□□ -0.49
PTPRF-214ENST00000496043 CLEC3AO75596 197 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 S100BP04271 92 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-214ENST00000496043 CD1DP15813 335 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 ZNF10P21506 573 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-214ENST00000496043 HPDP32754 393 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-214ENST00000496043 RAB10P61026 200 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 TUBA3CQ13748 450 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 SLBPQ14493 270 aaKnown RBP eCLIP11.96□□□□□ -0.49
PTPRF-214ENST00000496043 HIST2H2ACQ16777 129 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-214ENST00000496043 HIST2H2AA3Q6FI13 130 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 TUBA3EQ6PEY2 450 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 GFRALQ6UXV0 394 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 SYT10Q6XYQ8 523 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 CCDC25Q86WR0 208 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 RPS19BP1Q86WX3 136 aaKnown RBP11.96□□□□□ -0.49
PTPRF-214ENST00000496043 CA13Q8N1Q1 262 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 PPM1NQ8N819 430 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 SNX31Q8N9S9 440 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 STAG3L4Q8TBR4 150 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 ELP5Q8TE02 316 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 GAL3ST3Q96A11 431 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 KIAA1191Q96A73 305 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 UBXN10Q96LJ8 280 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 NPLQ9BXD5 320 aaPredicted RBP11.96□□□□□ -0.49
PTPRF-214ENST00000496043 EHD1Q9H4M9 534 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 COPG2Q9UBF2 871 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 PTBP2Q9UKA9 531 aaKnown RBP11.96□□□□□ -0.49
PTPRF-214ENST00000496043 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.96□□□□□ -0.49
PTPRF-214ENST00000496043 POLEQ07864 2286 aa11.96□□□□□ -0.49
PTPRF-214ENST00000496043 NAV2Q8IVL1 2488 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 LRIT2A6NDA9 550 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 A8MUA0 341 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 CLDN4O14493 209 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 CLDN1O95832 211 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 CD46P15529 392 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 MAOAP21397 527 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 CRABP2P29373 138 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 HSPA7P48741 367 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 TDGF1P3P51864 188 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 KCNK10P57789 538 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 OC90Q02509 493 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-214ENST00000496043 LAPTM5Q13571 262 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 RUNX2Q13950 521 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 OR4D1Q15615 310 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 OR1C1Q15619 314 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 ZKSCAN8Q15776 578 aaPredicted RBP11.95□□□□□ -0.5
PTPRF-214ENST00000496043 KBTBD12Q3ZCT8 623 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 XKR6Q5GH73 641 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 SPINK14Q6IE38 97 aa11.95□□□□□ -0.5
PTPRF-214ENST00000496043 RAPH1Q70E73 1250 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms