RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 MAOAP21397 527 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 TERF1P54274 439 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 SKP1P63208 163 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 MEF2AQ02078 507 aaPredicted RBP13.02□□□□□ -0.33
VARS-227ENST00000489979 KIF5AQ12840 1032 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 HYAL2Q12891 473 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 CTBP1Q13363 440 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 KCTD19Q17RG1 926 aaPredicted RBP13.02□□□□□ -0.33
VARS-227ENST00000489979 GXYLT1Q4G148 440 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 PAOXQ6QHF9 649 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 AGTRAPQ6RW13 159 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 LCTLQ6UWM7 567 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 C4orf22Q6V702 233 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 DENND6AQ8IWF6 608 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.02□□□□□ -0.33
VARS-227ENST00000489979 OR5M9Q8NGP3 310 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 OR10Q1Q8NGQ4 319 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 TSGA10Q9BZW7 698 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 PNPLA3Q9NST1 481 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 ZNF358Q9NW07 568 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 ST6GALNAC2Q9UJ37 374 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 ADAMTS6Q9UKP5 1117 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 FBXW2Q9UKT8 454 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 PDE10AQ9Y233 779 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 CAPN6Q9Y6Q1 641 aa13.02□□□□□ -0.33
VARS-227ENST00000489979 FLNAP21333 2647 aaKnown RBP13.02□□□□□ -0.33
VARS-227ENST00000489979 EML6Q6ZMW3 1958 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 IGKV3D-11A0A0A0MRZ8 115 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 A0A1B0GTL3 188 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 PINLYPA6NC86 204 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 ITGA10O75578 1167 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 ZNF888P0CJ79 500 aaPredicted RBP13.01□□□□□ -0.33
VARS-227ENST00000489979 NPPBP16860 134 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 TPSB2P20231 275 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 CCR8P51685 355 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 CLCN2P51788 898 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 DLX5P56178 289 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 PPIAP62937 165 aaKnown RBP13.01□□□□□ -0.33
VARS-227ENST00000489979 PWP1Q13610 501 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 THOC5Q13769 683 aaKnown RBP13.01□□□□□ -0.33
VARS-227ENST00000489979 DHX34Q14147 1143 aaKnown RBP13.01□□□□□ -0.33
VARS-227ENST00000489979 SIX1Q15475 284 aaPredicted RBP13.01□□□□□ -0.33
VARS-227ENST00000489979 TPSAB1Q15661 275 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 CCNG2Q16589 344 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 CASC4Q6P4E1 433 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 GSTA5Q7RTV2 222 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 ZZZ3Q8IYH5 903 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 APCDD1LQ8NCL9 501 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 SGPP1Q9BX95 441 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 POLDIP3Q9BY77 421 aaKnown RBP13.01□□□□□ -0.33
VARS-227ENST00000489979 SLC6A16Q9GZN6 736 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 RHBGQ9H310 441 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 TIMMDC1Q9NPL8 285 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 NECTIN3Q9NQS3 549 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 PRDM9Q9NQV7 894 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 DLL4Q9NR61 685 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 DEPPQ9NTK1 212 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 KCMF1Q9P0J7 381 aa13.01□□□□□ -0.33
VARS-227ENST00000489979 FAM166BA8MTA8 275 aa13□□□□□ -0.33
VARS-227ENST00000489979 MYO1DO94832 1006 aa13□□□□□ -0.33
VARS-227ENST00000489979 TUBB4AP04350 444 aa13□□□□□ -0.33
VARS-227ENST00000489979 CCND1P24385 295 aa13□□□□□ -0.33
VARS-227ENST00000489979 ACVR2AP27037 513 aa13□□□□□ -0.33
VARS-227ENST00000489979 ZFP36L2P47974 494 aaKnown RBP13□□□□□ -0.33
VARS-227ENST00000489979 CDK16Q00536 496 aa13□□□□□ -0.33
VARS-227ENST00000489979 PLGLB1Q02325 96 aa13□□□□□ -0.33
VARS-227ENST00000489979 RGS1Q08116 209 aa13□□□□□ -0.33
VARS-227ENST00000489979 SNTB1Q13884 538 aaKnown RBP13□□□□□ -0.33
VARS-227ENST00000489979 NIPAL1Q6NVV3 410 aa13□□□□□ -0.33
VARS-227ENST00000489979 ZNF585AQ6P3V2 769 aa13□□□□□ -0.33
VARS-227ENST00000489979 KIAA0408Q6ZU52 694 aa13□□□□□ -0.33
VARS-227ENST00000489979 ABHD13Q7L211 337 aa13□□□□□ -0.33
VARS-227ENST00000489979 PSD4Q8NDX1 1056 aa13□□□□□ -0.33
VARS-227ENST00000489979 ARMC2Q8NEN0 867 aa13□□□□□ -0.33
VARS-227ENST00000489979 B3GNT7Q8NFL0 401 aa13□□□□□ -0.33
VARS-227ENST00000489979 ABHD11Q8NFV4 315 aa13□□□□□ -0.33
VARS-227ENST00000489979 MYRIPQ8NFW9 859 aa13□□□□□ -0.33
VARS-227ENST00000489979 NT5CQ8TCD5 201 aa13□□□□□ -0.33
VARS-227ENST00000489979 UTP15Q8TED0 518 aaKnown RBP13□□□□□ -0.33
VARS-227ENST00000489979 ZNF669Q96BR6 464 aaPredicted RBP13□□□□□ -0.33
VARS-227ENST00000489979 PWWP2AQ96N64 755 aa13□□□□□ -0.33
VARS-227ENST00000489979 GPATCH1Q9BRR8 931 aaKnown RBP13□□□□□ -0.33
VARS-227ENST00000489979 TTYH2Q9BSA4 534 aa13□□□□□ -0.33
VARS-227ENST00000489979 DESI2Q9BSY9 194 aa13□□□□□ -0.33
VARS-227ENST00000489979 SARGQ9BW04 601 aa13□□□□□ -0.33
VARS-227ENST00000489979 PARVBQ9HBI1 364 aa13□□□□□ -0.33
VARS-227ENST00000489979 ZFATQ9P243 1243 aa13□□□□□ -0.33
VARS-227ENST00000489979 ZNF223Q9UK11 482 aaPredicted RBP13□□□□□ -0.33
VARS-227ENST00000489979 ERVK-11Q9UQG0 969 aa13□□□□□ -0.33
VARS-227ENST00000489979 PLEKHA6Q9Y2H5 1048 aa13□□□□□ -0.33
VARS-227ENST00000489979 A0A0G2JNJ9 132 aa12.99□□□□□ -0.33
VARS-227ENST00000489979 TRBC2A0A5B9 178 aa12.99□□□□□ -0.33
VARS-227ENST00000489979 TMEM200CA6NKL6 621 aa12.99□□□□□ -0.33
VARS-227ENST00000489979 FIGNL2A6NMB9 653 aa12.99□□□□□ -0.33
VARS-227ENST00000489979 ACOT7O00154 380 aa12.99□□□□□ -0.33
VARS-227ENST00000489979 PSMD12O00232 456 aaPredicted RBP12.99□□□□□ -0.33
VARS-227ENST00000489979 EIF3FO00303 357 aaPredicted RBP12.99□□□□□ -0.33
VARS-227ENST00000489979 SLC16A5O15375 505 aa12.99□□□□□ -0.33
VARS-227ENST00000489979 PROM1O43490 865 aa12.99□□□□□ -0.33
VARS-227ENST00000489979 C8GP07360 202 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms