RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 UBE2R2Q712K3 238 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 COX15Q7KZN9 410 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PIWIL4Q7Z3Z4 852 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PPP1R32Q7Z5V6 425 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 GALNT7Q86SF2 657 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PAQR7Q86WK9 346 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 CNTN4Q8IWV2 1026 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 KLHL7Q8IXQ5 586 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PALM2Q8IXS6 379 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 OR4N4Q8N0Y3 316 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PDIK1LQ8N165 341 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 GALNT16Q8N428 558 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 CSNK1A1LQ8N752 337 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PPFIBP2Q8ND30 876 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 ZNF480Q8WV37 535 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 ZDHHC19Q8WVZ1 309 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 TM9SF4Q92544 642 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 RERGQ96A58 199 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 MVB12AQ96EY5 273 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 CERS2Q96G23 380 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 CABS1Q96KC9 395 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 CAPZA3Q96KX2 299 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 NDNQ99608 321 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 NAPGQ99747 312 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 ZNF304Q9HCX3 659 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PPANQ9NQ55 473 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 TAS2R13Q9NYV9 303 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PRR13Q9NZ81 148 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 CTSFQ9UBX1 484 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 ZNF282Q9UDV7 671 aaPredicted RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 TAC3Q9UHF0 121 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 TRMT6Q9UJA5 497 aaKnown RBP6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 FBXL4Q9UKA2 621 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 VPS4AQ9UN37 437 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 PCDHB14Q9Y5E9 798 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 SAR1BQ9Y6B6 198 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 MAU2Q9Y6X3 613 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 CNTRLQ7Z7A1 2325 aa6.47□□□□□ -1.37
CCDC88A-213ENST00000476903 FLNBO75369 2602 aaKnown RBP6.46□□□□□ -1.37
CCDC88A-213ENST00000476903 IGKV1-8A0A0C4DH67 115 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 PABPN1LA6NDY0 278 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 VSTM2BA6NLU5 285 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 E7ENX8 843 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 CCDC188H7C350 402 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 SOCS6O14544 535 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 HAT1O14929 419 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 SLC16A5O15375 505 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 PRPF4O43172 522 aaKnown RBP eCLIP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 BANF1O75531 89 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 SORBS2O94875 1100 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 PLATP00750 562 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 FBLP22087 321 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 CCND1P24385 295 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 HRH2P25021 359 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 ITGA3P26006 1051 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 IVDP26440 423 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 IMPA1P29218 277 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 PAFAH1B1P43034 410 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 CARSP49589 748 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 ARL4CP56559 192 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 SOX8P57073 446 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 TAP2Q03519 686 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 RELAQ04206 551 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 CDSNQ15517 529 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 RBBP7Q16576 425 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 TUBB8Q3ZCM7 444 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 GARNL3Q5VVW2 1013 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 HLA-DQA1Q5Y7H0 255 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 ZNF425Q6IV72 752 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 HIBCHQ6NVY1 386 aaPredicted RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 SHISA6Q6ZSJ9 500 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 ADCK2Q7Z695 626 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 RP1L1Q8IWN7 2480 aaPredicted RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 MYO1HQ8N1T3 1032 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 METTL27Q8N6F8 245 aaPredicted RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 RBMXL3Q8N7X1 1067 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 CPT1CQ8TCG5 803 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 MCOLN3Q8TDD5 553 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 EEF1AKMT1Q8WVE0 214 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 PNPLA2Q96AD5 504 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 MIEF2Q96C03 454 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 LRRC39Q96DD0 335 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 C10orf90Q96M02 699 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 CCDC138Q96M89 665 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 OR2A5Q96R48 311 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 SCN2AQ99250 2005 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 PCBD2Q9H0N5 130 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 PARVBQ9HBI1 364 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 SLAMF7Q9NQ25 335 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 CCDC177Q9NQR7 707 aaPredicted RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 ABCF3Q9NUQ8 709 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 STOX2Q9P2F5 926 aaPredicted RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 RNF14Q9UBS8 474 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 CORO1CQ9ULV4 474 aaPredicted RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 CDC14AQ9UNH5 594 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 RUVBL1Q9Y265 456 aaKnown RBP6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 B3GNT3Q9Y2A9 372 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 HS3ST3B1Q9Y662 390 aa6.46□□□□□ -1.38
CCDC88A-213ENST00000476903 RELNP78509 3460 aa6.45□□□□□ -1.38
CCDC88A-213ENST00000476903 SPENQ96T58 3664 aaKnown RBP6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms