RNA–Protein interactions for RNA: ENST00000476739.5

HDAC3-208, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 422 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-208ENST00000476739 PRPF4O43172 522 aaKnown RBP eCLIP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 ERI3O43414 337 aaKnown RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 CHST10O43529 356 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 GLRA3O75311 464 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 CDC123O75794 336 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 C1QL1O75973 258 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 TGFB1P01137 390 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 PROCP04070 461 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 CD63P08962 238 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 TAC1P20366 129 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 NR1D1P20393 614 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 MMP11P24347 488 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 XCR1P46094 333 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 NEK2P51955 445 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 PLA2G16P53816 162 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 BTN3A2P78410 334 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 SLC18A2Q05940 514 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 ZNF844Q08AG5 666 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 TRAF3Q13114 568 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 LAPTM5Q13571 262 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 DDX39BQ13838 428 aaKnown RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 RUNX2Q13950 521 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 HERC3Q15034 1050 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 CPSF6Q16630 551 aaKnown RBP eCLIP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 HIST2H2ACQ16777 129 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 ADPRMQ3LIE5 342 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 PAGE2BQ5JRK9 111 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 ZNF678Q5SXM1 525 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 LIPJQ5W064 366 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 HIST2H2AA3Q6FI13 130 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 MED27Q6P2C8 311 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 KIRREL2Q6UWL6 708 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 ABHD13Q7L211 337 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 LCA5Q86VQ0 697 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 RAB43Q86YS6 212 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 MYLK4Q86YV6 388 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 APLFQ8IW19 511 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 CA13Q8N1Q1 262 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 L3MBTL4Q8NA19 623 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 TTLQ8NG68 377 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 OR7G3Q8NG95 312 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 OR4F6Q8NGB9 312 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 HUS1BQ8NHY5 278 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 WBP1Q96G27 269 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 MTERF1Q99551 399 aaKnown RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 ROPN1BQ9BZX4 212 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 PITHD1Q9GZP4 211 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 VN1R1Q9GZP7 353 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 REXO4Q9GZR2 422 aaKnown RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 ING2Q9H160 280 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 ROPN1Q9HAT0 212 aaPredicted RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 ZNF225Q9UK10 706 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 NXT1Q9UKK6 140 aaKnown RBP9.16□□□□□ -0.94
HDAC3-208ENST00000476739 TMCO1Q9UM00 188 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 NUP210LQ5VU65 1888 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 NBEAQ8NFP9 2946 aa9.16□□□□□ -0.94
HDAC3-208ENST00000476739 ATRXP46100 2492 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 FAM208BQ5VWN6 2430 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 MAGEB17A8MXT2 336 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 FAM227AF5H4B4 570 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 H0YIV9 168 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 AGPSO00116 658 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 SAP18O00422 153 aaKnown RBP9.15□□□□□ -0.94
HDAC3-208ENST00000476739 RTCAO00442 366 aaKnown RBP9.15□□□□□ -0.94
HDAC3-208ENST00000476739 COPEO14579 308 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 PLIN3O60664 434 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 UGDHO60701 494 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 SPAG7O75391 227 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 SUPT7LO94864 414 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 ETHE1O95571 254 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 PDGFAP04085 211 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 IMPDH1P20839 514 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 ATP5F1P24539 256 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-208ENST00000476739 CRHR1P34998 444 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 ARL1P40616 181 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-208ENST00000476739 CCT5P48643 541 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 CCL11P51671 97 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 CCNG1P51959 295 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 PRKAA2P54646 552 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 EMP2P54851 167 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 STXBP1P61764 594 aaKnown RBP9.15□□□□□ -0.94
HDAC3-208ENST00000476739 HERVK_113P63132 956 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 Q0VFX4 171 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 KCNAB2Q13303 367 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 RAPSNQ13702 412 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 ZRSR2Q15696 482 aaKnown RBP9.15□□□□□ -0.94
HDAC3-208ENST00000476739 RBBP7Q16576 425 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 LETMD1Q6P1Q0 360 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 METTL2BQ6P1Q9 378 aaKnown RBP9.15□□□□□ -0.94
HDAC3-208ENST00000476739 ABHD17CQ6PCB6 329 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 ZYG11AQ6WRX3 759 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 ZNF793Q6ZN11 406 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 LANCL3Q6ZV70 420 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 SRRM1Q8IYB3 904 aaKnown RBP9.15□□□□□ -0.94
HDAC3-208ENST00000476739 IQCKQ8N0W5 287 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 RIBC1Q8N443 379 aaPredicted RBP9.15□□□□□ -0.94
HDAC3-208ENST00000476739 BANPQ8N9N5 519 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 OR2L5Q8NG80 312 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 OR11G2Q8NGC1 345 aa9.15□□□□□ -0.94
HDAC3-208ENST00000476739 WDR20Q8TBZ3 569 aa9.15□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 9.3 ms