RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.38□□□□□ -1.23
USP54-211ENST00000474929 ELOA3DA6NLF2 546 aaPredicted RBP7.38□□□□□ -1.23
USP54-211ENST00000474929 ZNF839A8K0R7 811 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 B4GALT2O60909 372 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 CRHP06850 196 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 FHP07954 510 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 CSF3P09919 207 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 MYBL1P10243 752 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 CHRM3P20309 590 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 CHMP24386 653 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 PSMB5P28074 263 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 RBMXP38159 391 aaKnown RBP7.38□□□□□ -1.23
USP54-211ENST00000474929 LIMS1P48059 325 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 AGFG1P52594 562 aaKnown RBP7.38□□□□□ -1.23
USP54-211ENST00000474929 JAM2P57087 298 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 XIAPP98170 497 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 MPP3Q13368 585 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 ELOA3BQ3SY89 546 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 ADAM5Q6NVV9 412 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 IL20RBQ6UXL0 311 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 SLC25A41Q8N5S1 370 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 GPATCH11Q8N954 259 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 APCDD1LQ8NCL9 501 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 ELOA3Q8NG57 546 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 ASZ1Q8WWH4 475 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 TSLPQ969D9 159 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 TBC1D20Q96BZ9 403 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 FAM111AQ96PZ2 611 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 AGPAT1Q99943 283 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 SLC6A15Q9H2J7 730 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 ZFP64Q9NPA5 681 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 PCYOX1Q9UHG3 505 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 TTC7AQ9ULT0 858 aaPredicted RBP7.38□□□□□ -1.23
USP54-211ENST00000474929 CAMK2AQ9UQM7 478 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 ZDHHC9Q9Y397 364 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 ATG4BQ9Y4P1 393 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 ATP6V1DQ9Y5K8 247 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 ARL5AQ9Y689 179 aa7.38□□□□□ -1.23
USP54-211ENST00000474929 HEATR5AQ86XA9 2040 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 A0A0G2JMM0 328 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 A0A1W2PPB8 328 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 A0A1W2PRS3 328 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 TCRBV16S1A1N1A0A5B0 115 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 GOLGA6L4A6NEF3 574 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 LRRC14BA6NHZ5 514 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 KIR3DP1A8MWS1 328 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 C16orf97H3BN30 126 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 TGFBR3LH3BV60 316 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 TRIM77I1YAP6 450 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 AVILO75366 819 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 CDC123O75794 336 aaPredicted RBP7.37□□□□□ -1.23
USP54-211ENST00000474929 OR6B1O95007 311 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 RCBTB2O95199 551 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 IGHV4-39P01824 125 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 APOA4P06727 396 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 THBS1P07996 1170 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 IGHV4-31P0DP07 118 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 CYP4B1P13584 511 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 POU2F1P14859 743 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 IL1RNP18510 177 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 CDK11BP21127 795 aaKnown RBP7.37□□□□□ -1.23
USP54-211ENST00000474929 LOXP28300 417 aaPredicted RBP7.37□□□□□ -1.23
USP54-211ENST00000474929 FOXN2P32314 431 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 SRP14P37108 136 aaKnown RBP7.37□□□□□ -1.23
USP54-211ENST00000474929 NUDT6P53370 316 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 WNT3P56703 355 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 POLR2FP61218 127 aaKnown RBP7.37□□□□□ -1.23
USP54-211ENST00000474929 ABATP80404 500 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 SLC25A11Q02978 314 aaKnown RBP7.37□□□□□ -1.23
USP54-211ENST00000474929 GBE1Q04446 702 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 DPYSL3Q14195 570 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 GRB7Q14451 532 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 BRD3Q15059 726 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 NOMO1Q15155 1222 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 TYSND1Q2T9J0 566 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 TEX44Q53QW1 395 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 FBLN7Q53RD9 439 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 NHSL2Q5HYW2 709 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 ISM2Q6H9L7 571 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 SERPINA9Q86WD7 417 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 DND1Q8IYX4 353 aaKnown RBP7.37□□□□□ -1.23
USP54-211ENST00000474929 CLDN19Q8N6F1 224 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 ARIH2OSQ8N7S6 290 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 NIPA2Q8N8Q9 360 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 SEMA6DQ8NFY4 1073 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 OR10H5Q8NGA6 315 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 ZPLD1Q8TCW7 415 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 FAM216AQ8WUB2 273 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 PROX1Q92786 737 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 KAT2AQ92830 837 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 LRRC45Q96CN5 670 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 REPS1Q96D71 796 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 THAP11Q96EK4 314 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 MRFAP1L1Q96HT8 127 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 ADAD1Q96M93 576 aaKnown RBP7.37□□□□□ -1.23
USP54-211ENST00000474929 FOPNLQ96NB1 174 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 RASL10BQ96S79 203 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 TTC1Q99614 292 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 TIMP4Q99727 224 aa7.37□□□□□ -1.23
USP54-211ENST00000474929 GRIP2Q9C0E4 1043 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms