RNA–Protein interactions for RNA: ENST00000465727.5

SDF4-205, Transcript of stromal cell derived factor 4, humanhuman

TSL 2

Gene SDF4, Length 2,095 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF4-205ENST00000465727 FTSJ1Q9UET6 329 aa18.97■□□□□ 0.63
SDF4-205ENST00000465727 SSR3Q9UNL2 185 aa18.97■□□□□ 0.63
SDF4-205ENST00000465727 H3BM21 787 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 SCAMP2O15127 329 aaKnown RBP18.96■□□□□ 0.63
SDF4-205ENST00000465727 CSF3P09919 207 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 LIMS1P48059 325 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 SLC6A12P48065 614 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 RPS24P62847 133 aaKnown RBP18.96■□□□□ 0.63
SDF4-205ENST00000465727 NKX3-2P78367 333 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 EFR3AQ14156 821 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 RNLSQ5VYX0 342 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 ENKURQ8TC29 256 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 SH3KBP1Q96B97 665 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 REPS1Q96D71 796 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 ABCG8Q9H221 673 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 FAM83DQ9H4H8 585 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 CCSER2Q9H7U1 834 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 SLC25A19Q9HC21 320 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 ZNF282Q9UDV7 671 aaPredicted RBP18.96■□□□□ 0.63
SDF4-205ENST00000465727 OGDHLQ9ULD0 1010 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 VPS4AQ9UN37 437 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 LOC105371267A0A1B0GV96 52 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 GLTPD2A6NH11 291 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 PROM1O43490 865 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 CPNE3O75131 537 aaKnown RBP18.96■□□□□ 0.63
SDF4-205ENST00000465727 PRAMEF12O95522 483 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 C1QBP02746 253 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 RPLP2P05387 115 aaKnown RBP18.96■□□□□ 0.63
SDF4-205ENST00000465727 ZDHHC11BP0C7U3 371 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 LAMP1P11279 417 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 CBLP22681 906 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 DAB2P98082 770 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 RBBP4Q09028 425 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 SMARCB1Q12824 385 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 HSDL2Q6YN16 418 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 CREB3L2Q70SY1 520 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 SPERTQ8NA61 448 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 OR9Q2Q8NGE9 314 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 VANGL1Q8TAA9 524 aaPredicted RBP18.96■□□□□ 0.63
SDF4-205ENST00000465727 KLHL6Q8WZ60 621 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 MAL2Q969L2 176 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 CLIP3Q96DZ5 547 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 FAM129BQ96TA1 746 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 PIP5K1AQ99755 562 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 WDR70Q9NW82 654 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 CRLS1Q9UJA2 301 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 PADI3Q9ULW8 664 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 GPSM3Q9Y4H4 160 aa18.96■□□□□ 0.63
SDF4-205ENST00000465727 A0A0B4J293 547 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 FABP12A6NFH5 140 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 M0R129 80 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 INPPL1O15357 1258 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 TRBC1P01850 177 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 C8GP07360 202 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 JUPP14923 745 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 CA8P35219 290 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 ASMTP46597 345 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 CRISP1P54107 249 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 SNRPGP62308 76 aaKnown RBP18.95■□□□□ 0.62
SDF4-205ENST00000465727 MGAT3Q09327 533 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 NCF4Q15080 339 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 CCNJQ5T5M9 372 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 ARMC12Q5T9G4 340 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 FAM92BQ6ZTR7 304 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 DDX53Q86TM3 631 aaKnown RBP18.95■□□□□ 0.62
SDF4-205ENST00000465727 NPAS3Q8IXF0 933 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 CREB3L4Q8TEY5 395 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 UBASH3BQ8TF42 649 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 GEMIN6Q8WXD5 167 aaKnown RBP18.95■□□□□ 0.62
SDF4-205ENST00000465727 RNF31Q96EP0 1072 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 ZC3HAV1LQ96H79 300 aaKnown RBP18.95■□□□□ 0.62
SDF4-205ENST00000465727 SLC12A9Q9BXP2 914 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 ARHGAP39Q9C0H5 1083 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 ZFYVE1Q9HBF4 777 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 VPS29Q9UBQ0 182 aa18.95■□□□□ 0.62
SDF4-205ENST00000465727 A0A1B0GVM2 712 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 LINC00854A0A1B0GVQ3 168 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 TMEM189-UBE2V1I3L0A0 370 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 YY2O15391 372 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 UGDHO60701 494 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 TMCC2O75069 709 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 CSO75390 466 aaKnown RBP18.94■□□□□ 0.62
SDF4-205ENST00000465727 CYP17A1P05093 508 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 HIST1H2AGP0C0S8 130 aaPredicted RBP18.94■□□□□ 0.62
SDF4-205ENST00000465727 ATF6P18850 670 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 HIST1H2ADP20671 130 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 AOAHP28039 575 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 SOX3P41225 446 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 ARF5P84085 180 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 MLLT11Q13015 90 aaPredicted RBP18.94■□□□□ 0.62
SDF4-205ENST00000465727 VEPH1Q14D04 833 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 CPTPQ5TA50 214 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 DDI2Q5TDH0 399 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 FRMPD2BQ6IN97 320 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 UBE2R2Q712K3 238 aaPredicted RBP18.94■□□□□ 0.62
SDF4-205ENST00000465727 NAGSQ8N159 534 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 SNAPC3Q92966 411 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 MYO19Q96H55 970 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 TMEM80Q96HE8 168 aa18.94■□□□□ 0.62
SDF4-205ENST00000465727 HIST1H2AHQ96KK5 128 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms