RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 ZRSR2Q15696 482 aaKnown RBP11.03□□□□□ -0.64
CUX1-207ENST00000465461 CRTC2Q53ET0 693 aaPredicted RBP11.03□□□□□ -0.64
CUX1-207ENST00000465461 SGO1Q5FBB7 561 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 BEND6Q5SZJ8 279 aaPredicted RBP11.03□□□□□ -0.64
CUX1-207ENST00000465461 MFSD4BQ5TF39 518 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 LIPJQ5W064 366 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 ZYG11AQ6WRX3 759 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 ABHD13Q7L211 337 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 UBE3DQ7Z6J8 389 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 MILR1Q7Z6M3 343 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 LAS2Q8IYD9 372 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 CCNYL1Q8N7R7 359 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 ARMC2Q8NEN0 867 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 TTLQ8NG68 377 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 HUS1BQ8NHY5 278 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 C8orf44Q96CB5 159 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 APOPT1Q96IL0 206 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 MTERF1Q99551 399 aaKnown RBP11.03□□□□□ -0.64
CUX1-207ENST00000465461 ARHGAP9Q9BRR9 750 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 CRB3Q9BUF7 120 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 TMEM109Q9BVC6 243 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 SORBS1Q9BX66 1292 aaKnown RBP11.03□□□□□ -0.64
CUX1-207ENST00000465461 ERVK-6Q9BXR3 956 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 SEMA4CQ9C0C4 833 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 REXO4Q9GZR2 422 aaKnown RBP11.03□□□□□ -0.64
CUX1-207ENST00000465461 WDR54Q9H977 334 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 MKKSQ9NPJ1 570 aaPredicted RBP11.03□□□□□ -0.64
CUX1-207ENST00000465461 C3orf18Q9UK00 162 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 ZNF225Q9UK10 706 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 MAP4K5Q9Y4K4 846 aa11.03□□□□□ -0.64
CUX1-207ENST00000465461 CFAP47Q6ZTR5 3102 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 URADA6NGE7 173 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 A6NL46 340 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 MAGEB17A8MXT2 336 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 SOCS6O14544 535 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 RGS16O15492 202 aaPredicted RBP11.02□□□□□ -0.65
CUX1-207ENST00000465461 PRPF4O43172 522 aaKnown RBP eCLIP11.02□□□□□ -0.65
CUX1-207ENST00000465461 ERLIN1O75477 346 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 OR4F21O95013 312 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 BMP10O95393 424 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 ETHE1O95571 254 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 RECKO95980 971 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 PRB1P04280 392 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 ITGB2P05107 769 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 CPA3P15088 417 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 CERS1P27544 350 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 CCL11P51671 97 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 EMP2P54851 167 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 POLE2P56282 527 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 STXBP1P61764 594 aaKnown RBP11.02□□□□□ -0.65
CUX1-207ENST00000465461 RPS13P62277 151 aaKnown RBP11.02□□□□□ -0.65
CUX1-207ENST00000465461 RUNX2Q13950 521 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 CCDC153Q494R4 210 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 MINDY4Q4G0A6 757 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 TCHHL1Q5QJ38 904 aaPredicted RBP11.02□□□□□ -0.65
CUX1-207ENST00000465461 LETMD1Q6P1Q0 360 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 MRGPREQ86SM8 312 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 RAB43Q86YS6 212 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 CA13Q8N1Q1 262 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 L3MBTL4Q8NA19 623 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 TCP10LQ8TDR4 215 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 APOBEC4Q8WW27 367 aaKnown RBP11.02□□□□□ -0.65
CUX1-207ENST00000465461 THAP4Q8WY91 577 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 GAL3ST3Q96A11 431 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 FAR2Q96K12 515 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 CATSPER2Q96P56 530 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 FAM111AQ96PZ2 611 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 NTMT1Q9BV86 223 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 C1QTNF3Q9BXJ4 246 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 MS4A8Q9BY19 250 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 SHCBP1LQ9BZQ2 653 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 PITHD1Q9GZP4 211 aaPredicted RBP11.02□□□□□ -0.65
CUX1-207ENST00000465461 FARSBQ9NSD9 589 aaKnown RBP11.02□□□□□ -0.65
CUX1-207ENST00000465461 P4HTMQ9NXG6 502 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 MKL2Q9ULH7 1088 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 PLLPQ9Y342 182 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 HS3ST3B1Q9Y662 390 aa11.02□□□□□ -0.65
CUX1-207ENST00000465461 DSPP15924 2871 aaKnown RBP11.01□□□□□ -0.65
CUX1-207ENST00000465461 IGHV3-20A0A0C4DH32 117 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 CCDC151A5D8V7 595 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 IDSB3KWA1 339 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 H0YIV9 168 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 K7EM74 188 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 ERVH48-1M5A8F1 160 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 UBFD1O14562 309 aaKnown RBP11.01□□□□□ -0.65
CUX1-207ENST00000465461 UGDHO60701 494 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 B4GALT2O60909 372 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 HEXBP07686 556 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 CD63P08962 238 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 NR1D1P20393 614 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 MMP11P24347 488 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 NAGLUP54802 743 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 EEF1A2Q05639 463 aaKnown RBP11.01□□□□□ -0.65
CUX1-207ENST00000465461 RAPSNQ13702 412 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 PCLAFQ15004 111 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 ADPRMQ3LIE5 342 aa11.01□□□□□ -0.65
CUX1-207ENST00000465461 SOWAHCQ53LP3 525 aaPredicted RBP11.01□□□□□ -0.65
CUX1-207ENST00000465461 TTC19Q6DKK2 380 aaPredicted RBP11.01□□□□□ -0.65
CUX1-207ENST00000465461 METTL2BQ6P1Q9 378 aaKnown RBP11.01□□□□□ -0.65
CUX1-207ENST00000465461 ABHD17CQ6PCB6 329 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms