RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PCDH15Q96QU1 1955 aa6.18□□□□□ -1.42
USP40-202ENST00000409945 MED19A0JLT2 244 aaPredicted RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 PABPN1LA6NDY0 278 aaKnown RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 PGPEP1LA6NFU8 196 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 BTNL10A8MVZ5 291 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 KRT86O43790 486 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 CD48P09326 243 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 CTSEP14091 401 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 ZNF30P17039 623 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 PEX5P50542 639 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 CDH15P55291 814 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 RPL26P61254 145 aaKnown RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 DYNLT1P63172 113 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 TUBB4BP68371 445 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 IL9RQ01113 521 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 PDE1CQ14123 709 aaPredicted RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 TFDP3Q5H9I0 405 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 TXNRD3NBQ6F5E7 133 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 ZNF788Q6ZQV5 615 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 GLRX5Q86SX6 157 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 KLBQ86Z14 1044 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 ARMC8Q8IUR7 673 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 KATNAL2Q8IYT4 538 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 EXD1Q8NHP7 514 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 VAT1Q99536 393 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 IL12RB2Q99665 862 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 SEMA3CQ99985 751 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 DESI2Q9BSY9 194 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 EBF2Q9HAK2 575 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 FZD3Q9NPG1 666 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 ETNK2Q9NVF9 386 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 BEX4Q9NWD9 120 aaPredicted RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 SEPT10Q9P0V9 454 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 PEMTQ9UBM1 199 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 SPASTQ9UBP0 616 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 RPL26L1Q9UNX3 145 aaKnown RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 ASCC3Q8N3C0 2202 aaKnown RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 SPTY2D1-AS1A0A0U1RR47 76 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 SPAARA0A1B0GVQ0 90 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 MACROD2A1Z1Q3 448 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 NPIPB15A6NHN6 443 aaPredicted RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 MIF4GDA9UHW6 222 aaKnown RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 PSMD11O00231 422 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 ZW10O43264 779 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 CBX6O95503 412 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 ALPIP09923 528 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 IL4RP24394 825 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 TACR3P29371 465 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 MMP12P39900 470 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 ARSEP51690 589 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 RWDD2BP57060 319 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 CLDN2P57739 230 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 MAXP61244 160 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 UFM1P61960 85 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 TUBA4AP68366 448 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 BNC1Q01954 994 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 PPARDQ03181 441 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 PPIDQ08752 370 aaKnown RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 ILKQ13418 452 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 DCTN2Q13561 401 aaKnown RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 ELOCQ15369 112 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 LRRC73Q5JTD7 316 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 FBXO42Q6P3S6 717 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 MACC1Q6ZN28 852 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 DBX2Q6ZNG2 339 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 GCNT7Q6ZNI0 430 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 DPPA4Q7L190 304 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 PEX26Q7Z412 305 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 TEX26Q8N6G2 289 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 EID2Q8N6I1 236 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 SAP25Q8TEE9 199 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 TFB1MQ8WVM0 346 aaKnown RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 RAPGEF5Q92565 580 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 EME1Q96AY2 570 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 SH3KBP1Q96B97 665 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 ECHDC3Q96DC8 303 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 CNDP2Q96KP4 475 aaKnown RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 PPP1R2P1Q96PQ5 205 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 PHPT1Q9NRX4 125 aaPredicted RBP6.17□□□□□ -1.42
USP40-202ENST00000409945 ITM2BQ9Y287 266 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 RAI2Q9Y5P3 530 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 CSNK1G3Q9Y6M4 447 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 PLXNA2O75051 1894 aa6.17□□□□□ -1.42
USP40-202ENST00000409945 CTAGE9A4FU28 777 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 HACD1B0YJ81 288 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 CST8O60676 142 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 PGLSO95336 258 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 DDAH2O95865 285 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 ADAP00813 363 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 JCHAINP01591 159 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 CSF2P04141 144 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 PCCBP05166 539 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 MPGP29372 298 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 GBE1Q04446 702 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 ERV3-1Q14264 604 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 RPE65Q16518 533 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 NT5DC3Q86UY8 548 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 GKN2Q86XP6 184 aa6.16□□□□□ -1.42
USP40-202ENST00000409945 RNF10Q8N5U6 811 aaKnown RBP6.16□□□□□ -1.42
USP40-202ENST00000409945 NUS1Q96E22 293 aa6.16□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms