RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 APMAPQ9HDC9 416 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 ATP6V1HQ9UI12 483 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 MAPRE3Q9UPY8 281 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 MAP4K5Q9Y4K4 846 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 DCHS1Q96JQ0 3298 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 STMND1H3BQB6 276 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 SLC22A2O15244 555 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 OR4F21O95013 312 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 KRT6AP02538 564 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 KRT6BP04259 564 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 KRT6CP48668 564 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 RPL14P50914 215 aaKnown RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 MUM1Q2TAK8 710 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 MSANTD1Q6ZTZ1 278 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 NLGN4XQ8N0W4 816 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 NATD1Q8N6N6 113 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 NLGN4YQ8NFZ3 816 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 RNF138Q8WVD3 245 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 RGMAQ96B86 450 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 PHF21BQ96EK2 531 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 SLC45A3Q96JT2 553 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 SEMA4CQ9C0C4 833 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF700Q9H0M5 742 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 THSD1Q9NS62 852 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 MS4A12Q9NXJ0 267 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 EXO1Q9UQ84 846 aaKnown RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 MRPS2Q9Y399 296 aaKnown RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 CUL9Q8IWT3 2517 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 POLR1CO15160 346 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 MAP3K7O43318 606 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 PROM1O43490 865 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 SCRG1O75711 98 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 STK17BO94768 372 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 SLC35G6P0C7Q6 338 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 ALOX12P18054 663 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 HIST1H1TP22492 207 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 MDH1P40925 334 aaKnown RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 MTTPP55157 894 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 PCBP4P57723 403 aaKnown RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 DCDP81605 110 aaKnown RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 EMX2Q04743 252 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 STX3Q13277 289 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 ABRAXAS2Q15018 415 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 HKDC1Q2TB90 917 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 FAM71E1Q6IPT2 247 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 ZNF595Q8IYB9 648 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 SNX31Q8N9S9 440 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 SKA2Q8WVK7 121 aaPredicted RBP6.64□□□□□ -1.35
LIMA1-202ENST00000394943 SLC13A3Q8WWT9 602 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 MOCOSQ96EN8 888 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 WBP1Q96G27 269 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 IP6K3Q96PC2 410 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 KLHL31Q9H511 634 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 NMRK1Q9NWW6 199 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 DAPP1Q9UN19 280 aa6.64□□□□□ -1.35
LIMA1-202ENST00000394943 TAF4O00268 1085 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 SOCS6O14544 535 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 RAD1O60671 282 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 CHRNGP07510 517 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 UMODP07911 640 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 DRD2P14416 443 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 ATP1A2P50993 1020 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 SKP1P63208 163 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 CHAF1BQ13112 559 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 KCNAB1Q14722 419 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 SLC9A5Q14940 896 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 CHI3L2Q15782 390 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 LCN10Q6JVE6 187 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 APLFQ8IW19 511 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 LGI4Q8N135 537 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 GOLGA6L1Q8N7Z2 621 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 RCBTB1Q8NDN9 531 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 RERGQ96A58 199 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 COQ8BQ96D53 544 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 IQCGQ9H095 443 aaKnown RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 ACTR5Q9H9F9 607 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 GIN1Q9NXP7 522 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 NKIRAS1Q9NYS0 192 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 FAM8A1Q9UBU6 413 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 TCRBV16S1A1N1A0A5B0 115 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 FEZF1A0PJY2 475 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 NCF1BA6NI72 391 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 NCF1CA8MVU1 366 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 MAGEB17A8MXT2 336 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 SDHDO14521 159 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 OR2B3O76000 313 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 SUPT7LO94864 414 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 TNFSF15O95150 251 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 CLPSP04118 112 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 NCF1P14598 390 aaPredicted RBP6.63□□□□□ -1.35
LIMA1-202ENST00000394943 BGNP21810 368 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 GPR143P51810 404 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 LIM2P55344 173 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 HSD17B7P56937 341 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 PSPHP78330 225 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 BTKQ06187 659 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 RUNX2Q13950 521 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 NCF4Q15080 339 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 SPDYAQ5MJ70 313 aa6.63□□□□□ -1.35
LIMA1-202ENST00000394943 PHF19Q5T6S3 580 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms