RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 TPSB2P20231 275 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 MRPL19P49406 292 aaKnown RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 ZNF143P52747 638 aaPredicted RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 CRISP3P54108 245 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 GK3PQ14409 553 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 TPSAB1Q15661 275 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 TKFCQ3LXA3 575 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 C22orf42Q6IC83 251 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 SLC26A9Q7LBE3 791 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 ARL6IP6Q8N6S5 226 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 SLC43A3Q8NBI5 491 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 NOL4LQ96MY1 436 aaPredicted RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 NKX6-2Q9C056 277 aaPredicted RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 TMEM39AQ9NV64 488 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 PPM1HQ9ULR3 514 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 CARNS1A5YM72 827 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 J3QLW9 94 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 HBP1O60381 514 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 PDGFAP04085 211 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 ZNF19P17023 458 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 LPOP22079 712 aaPredicted RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 NFIXQ14938 502 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 C15orf52Q6ZUT6 534 aaKnown RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 ACOT1Q86TX2 421 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 TMEM18Q96B42 140 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 TLCD1Q96CP7 247 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 RBMXL1Q96E39 390 aaKnown RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 MICU1Q9BPX6 476 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 ESRP2Q9H6T0 727 aaKnown RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 NMNAT1Q9HAN9 279 aaPredicted RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 RAB9BQ9NP90 201 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 STXBP5LQ9Y2K9 1186 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 SH3BGRLO75368 114 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 ERAL1O75616 437 aaKnown RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 MT-ND1P03886 318 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 CSF1P09603 554 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 AQP2P41181 271 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 PTPRRQ15256 657 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 RBPMSQ93062 196 aaKnown RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 PNPLA2Q96AD5 504 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 SMIM12Q96EX1 92 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 PCBD2Q9H0N5 130 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 GJD2Q9UKL4 321 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 SEPT4O43236 478 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 BCAS2O75934 225 aaPredicted RBP8.47□□□□□ -1.05
LIG3-202ENST00000378526 BMP8BP34820 402 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 SSR2P43308 183 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 LSSP48449 732 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 DLX5P56178 289 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 GAD2Q05329 585 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 PDSS1Q5T2R2 415 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 AGAP6Q5VW22 663 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 KIAA0930Q6ICG6 404 aaPredicted RBP8.47□□□□□ -1.05
LIG3-202ENST00000378526 BMP8AQ7Z5Y6 402 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 LGI4Q8N135 537 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 SIGLECL1Q8N7X8 197 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 OR56B4Q8NH76 319 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 C10orf82Q8WW14 230 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 MSI2Q96DH6 328 aaKnown RBP8.47□□□□□ -1.05
LIG3-202ENST00000378526 LRRC46Q96FV0 321 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 CPB2Q96IY4 423 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 AGAP4Q96P64 663 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 FUCA2Q9BTY2 467 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 BCO1Q9HAY6 547 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 USP36Q9P275 1121 aaKnown RBP8.47□□□□□ -1.05
LIG3-202ENST00000378526 IRF6O14896 467 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 LYRM1O43325 122 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 GCP02774 474 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 MMP10P09238 476 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 MIPP30301 263 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 MCAMP43121 646 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 SLC6A9P48067 706 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 NFATC4Q14934 902 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 DHCR24Q15392 516 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 C17orf64Q86WR6 236 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 NPLOC4Q8TAT6 608 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 HAVCR2Q8TDQ0 301 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 SLC13A3Q8WWT9 602 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 ZNF512BQ96KM6 892 aaPredicted RBP8.47□□□□□ -1.05
LIG3-202ENST00000378526 SERTAD4Q9NUC0 356 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 SMLR1H3BR10 107 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 KDELR3O43731 214 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 TRAF3IP2O43734 574 aaPredicted RBP8.47□□□□□ -1.05
LIG3-202ENST00000378526 ENSAO43768 121 aaKnown RBP8.47□□□□□ -1.05
LIG3-202ENST00000378526 USF1P22415 310 aaPredicted RBP8.47□□□□□ -1.05
LIG3-202ENST00000378526 ICAM3P32942 547 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 EPHA4P54764 986 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 SNRPD1P62314 119 aaKnown RBP8.47□□□□□ -1.05
LIG3-202ENST00000378526 GPSM2P81274 684 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 NFATC3Q12968 1075 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 MEF2DQ14814 521 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 SOHLH1Q5JUK2 328 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 SLC35F5Q8WV83 523 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 C14orf79Q96F83 325 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 SLC2A9Q9NRM0 540 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 VNN3Q9NY84 501 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 VSX1Q9NZR4 365 aaPredicted RBP8.47□□□□□ -1.05
LIG3-202ENST00000378526 CXXC1Q9P0U4 656 aaPredicted RBP8.47□□□□□ -1.05
LIG3-202ENST00000378526 P2RX2Q9UBL9 471 aa8.47□□□□□ -1.05
LIG3-202ENST00000378526 SLC6A5Q9Y345 797 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms