RNA–Protein interactions for RNA: ENST00000368440.4

SMPDL3A-201, Transcript of sphingomyelin phosphodiesterase acid like 3A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPDL3A, Length 1,851 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPDL3A-201ENST00000368440 MESP1Q9BRJ9 268 aa14.28□□□□□ -0.12
SMPDL3A-201ENST00000368440 ERVK-6Q9BXR3 956 aa14.28□□□□□ -0.12
SMPDL3A-201ENST00000368440 MKS1Q9NXB0 559 aa14.28□□□□□ -0.12
SMPDL3A-201ENST00000368440 ZNF282Q9UDV7 671 aaPredicted RBP14.28□□□□□ -0.12
SMPDL3A-201ENST00000368440 LRIT2A6NDA9 550 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 PRPF4O43172 522 aaKnown RBP eCLIP14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 SH3BGRLO75368 114 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 JRKO75564 520 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 RECKO95980 971 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 ZGLP1P0C6A0 271 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 GSTM2P28161 218 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 ARL1P40616 181 aaPredicted RBP14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 CCNG1P51959 295 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 PRKAA2P54646 552 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 KLC1Q07866 573 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 DDX39BQ13838 428 aaKnown RBP14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 HERC3Q15034 1050 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 CPSF6Q16630 551 aaKnown RBP eCLIP14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 ADPRMQ3LIE5 342 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 LINC00303Q3SY05 128 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 CCDC153Q494R4 210 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 ZYG11AQ6WRX3 759 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 ABHD13Q7L211 337 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 ZC3H7AQ8IWR0 971 aaKnown RBP14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 L3MBTL4Q8NA19 623 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 ATP6V1E2Q96A05 226 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 MIEF2Q96C03 454 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 MS4A6EQ96DS6 147 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 NTMT1Q9BV86 223 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 MS4A8Q9BY19 250 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 MLXIPLQ9NP71 852 aa14.27□□□□□ -0.12
SMPDL3A-201ENST00000368440 IGSF10Q6WRI0 2623 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 UGDHO60701 494 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 SUPT7LO94864 414 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 CLDN9O95484 217 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 MYL2P10916 166 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 IMPDH1P20839 514 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 OCA2Q04671 838 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 RBBP7Q16576 425 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 PPP1R32Q7Z5V6 425 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 ARFGAP2Q8N6H7 521 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 CCDC63Q8NA47 563 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 OR4F6Q8NGB9 312 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 OR51Q1Q8NH59 317 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 TRPC4APQ8TEL6 797 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 GAL3ST3Q96A11 431 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 L3HYPDHQ96EM0 354 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 SEC16BQ96JE7 1060 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 F2RL3Q96RI0 385 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 RBCK1Q9BYM8 510 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 MKKSQ9NPJ1 570 aaPredicted RBP14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 SLC17A7Q9P2U7 560 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 ZNF225Q9UK10 706 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 POLHQ9Y253 713 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 PLLPQ9Y342 182 aa14.27□□□□□ -0.13
SMPDL3A-201ENST00000368440 SCN2AQ99250 2005 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 ERI3O43414 337 aaKnown RBP14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 TGFB1P01137 390 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 CD63P08962 238 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 STXBP1P61764 594 aaKnown RBP14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 GNGT1P63211 74 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 RHDQ02161 417 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 CLCQ05315 142 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 ATP1A4Q13733 1029 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 SSPNQ14714 243 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 ZRSR2Q15696 482 aaKnown RBP14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 CPZQ66K79 652 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 LETMD1Q6P1Q0 360 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 MRGPREQ86SM8 312 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 SLC22A9Q8IVM8 553 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 ARMC2Q8NEN0 867 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 HUS1BQ8NHY5 278 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 UBE2E3Q969T4 207 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 CATSPER2Q96P56 530 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 MTERF1Q99551 399 aaKnown RBP14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 REXO4Q9GZR2 422 aaKnown RBP14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 NXT1Q9UKK6 140 aaKnown RBP14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 MAN2B2Q9Y2E5 1009 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 KCNMB2Q9Y691 235 aa14.26□□□□□ -0.13
SMPDL3A-201ENST00000368440 TMEM120BA0PK00 339 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 URADA6NGE7 173 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 H0YIV9 168 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 MASP2O00187 686 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 BMP10O95393 424 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 ITGB2P05107 769 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 CHN1P15882 459 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 XCR1P46094 333 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 NEK2P51955 445 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 PLA2G16P53816 162 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 CHAF1BQ13112 559 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 PCLAFQ15004 111 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 BORAQ6PGQ7 559 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 UBE3DQ7Z6J8 389 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 WDR20Q8TBZ3 569 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 PPP4R1Q8TF05 950 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 PEX11GQ96HA9 241 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 BBC3Q96PG8 261 aaPredicted RBP14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 FAM111AQ96PZ2 611 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 SMC6Q96SB8 1091 aa14.25□□□□□ -0.13
SMPDL3A-201ENST00000368440 CRB3Q9BUF7 120 aa14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms