RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 P2RY2P41231 377 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 PRAMEF14Q5SWL7 426 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 PRAMEF13Q5VWM6 474 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 KIAA1614Q5VZ46 1190 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 KLHL35Q6PF15 583 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 TMIGD1Q6UXZ0 262 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 FAM124AQ86V42 546 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 TSPYL5Q86VY4 417 aaPredicted RBP19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 FAM81AQ8TBF8 368 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 CXorf40AQ8TE69 158 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 UBE2E3Q969T4 207 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 RAD51AP1Q96B01 352 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 COX14Q96I36 57 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 ZDHHC4Q9NPG8 344 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 PRKAG2Q9UGJ0 569 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 PCDHGB3Q9Y5G1 929 aa19.96■□□□□ 0.79
CCDC88B-203ENST00000359902 INHBBP09529 407 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 FSHRP23945 695 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 PTX3P26022 381 aaPredicted RBP19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 SLC35A2P78381 396 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 LCTLQ6UWM7 567 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 SLC16A12Q6ZSM3 486 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 ADGRD2Q7Z7M1 963 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 PDZD3Q86UT5 571 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 FAM129CQ86XR2 697 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 FAR1Q8WVX9 515 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 RUBCNLQ9H714 662 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 C1GALT1Q9NS00 363 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 NDUFAF4Q9P032 175 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 SLC23A2Q9UGH3 650 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 TPRKBQ9Y3C4 175 aa19.95■□□□□ 0.78
CCDC88B-203ENST00000359902 E9PQ18 207 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 CD6P30203 668 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 RRM2P31350 389 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 GCNT6Q5T4J0 391 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 CCDC71Q8IV32 467 aaPredicted RBP19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 PHF6Q8IWS0 365 aaKnown RBP eCLIP19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 SMARCD2Q92925 531 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 ACSL6Q9UKU0 697 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 ZNF99A8MXY4 864 aaPredicted RBP19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 BCL10O95999 233 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 OPN1SWP03999 348 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 KELP23276 732 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 IL12RB1P42701 662 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 RBBP4Q09028 425 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 FCHO2Q0JRZ9 810 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 CNTN1Q12860 1018 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 NPRL3Q12980 569 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 MAD2L1BPQ15013 274 aaPredicted RBP19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 NPTX1Q15818 432 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 AMZ2Q86W34 360 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 SPPL2AQ8TCT8 520 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 SUSD6Q92537 303 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 UBE2FQ969M7 185 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 MTERF3Q96E29 417 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 FAM210AQ96ND0 272 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 NRTNQ99748 197 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 ACAT2Q9BWD1 397 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 SORBS1Q9BX66 1292 aaKnown RBP19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 HDAC8Q9BY41 377 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 PREBQ9HCU5 417 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 TAS2R9Q9NYW1 312 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 CHD9Q3L8U1 2897 aa19.94■□□□□ 0.78
CCDC88B-203ENST00000359902 TBC1D3BA6NDS4 549 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 NDUFS2O75306 463 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 IL3P08700 152 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 TNFRSF1BP20333 461 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 RPP38P78345 283 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 PHEXP78562 749 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 RPA4Q13156 261 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 SCARB2Q14108 478 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 SLC5A12Q1EHB4 618 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 ADAMTSL4Q6UY14 1074 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 TFGQ92734 400 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 ITFG2Q969R8 447 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 PITX2Q99697 317 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 TMEM38AQ9H6F2 299 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 PRSS16Q9NQE7 514 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 TMEM184CQ9NVA4 438 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 SCN3BQ9NY72 215 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 TDRKHQ9Y2W6 561 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 PCDHGA10Q9Y5H3 936 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 BCAS1O75363 584 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 PRIM2P49643 509 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 EEF1A2Q05639 463 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 CAMK2GQ13555 558 aaPredicted RBP19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 SMN1Q16637 294 aaKnown RBP19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 PNCKQ6P2M8 343 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 HEATR4Q86WZ0 1026 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 ANKRD13BQ86YJ7 626 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 DCUN1D3Q8IWE4 304 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 MMP21Q8N119 569 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 OR5AK3PQ8NH89 298 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 NFKBIDQ8NI38 313 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 FGF13Q92913 245 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 TAMM41Q96BW9 452 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 HSPBAP1Q96EW2 488 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 WBP1LQ9NX94 342 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 ENPP5Q9UJA9 477 aa19.93■□□□□ 0.78
CCDC88B-203ENST00000359902 MAP4K5Q9Y4K4 846 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms